miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 79000 0.69 0.961721
Target:  5'- uCUGCCaccCUGGCCGcAAAguccuccgguGGAACGugCc -3'
miRNA:   3'- -GACGGau-GACCGGU-UUU----------UCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 79867 0.84 0.306564
Target:  5'- aCUGCCgaggaGCaGGCCGAGGAGAggGCGGCCa -3'
miRNA:   3'- -GACGGa----UGaCCGGUUUUUCU--UGCUGG- -5'
27233 5' -49 NC_005832.1 + 80183 0.7 0.953293
Target:  5'- -cGCCUccauccgACUGGaCCAGgggacccguGAGGAACGGCa -3'
miRNA:   3'- gaCGGA-------UGACC-GGUU---------UUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 81287 0.66 0.991909
Target:  5'- -aGCCcucACUugGGCCA---AGAGCGGCUa -3'
miRNA:   3'- gaCGGa--UGA--CCGGUuuuUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 84712 0.66 0.99435
Target:  5'- gUGCCcgGCccGGCCAAAuguuggaccagggcuAGGGACGagGCCa -3'
miRNA:   3'- gACGGa-UGa-CCGGUUU---------------UUCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 87412 0.66 0.993991
Target:  5'- -gGCUg--UGGCCGAAGuGGAgGGCCa -3'
miRNA:   3'- gaCGGaugACCGGUUUUuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 87429 0.68 0.982125
Target:  5'- -gGCauCUGCUGGCCAu--GGAcccgGCGGCa -3'
miRNA:   3'- gaCG--GAUGACCGGUuuuUCU----UGCUGg -5'
27233 5' -49 NC_005832.1 + 87736 0.68 0.974735
Target:  5'- -cGCCUACaaccUGGCCAucAGGAGAAUGuuuGCa -3'
miRNA:   3'- gaCGGAUG----ACCGGU--UUUUCUUGC---UGg -5'
27233 5' -49 NC_005832.1 + 89420 0.69 0.961721
Target:  5'- gUGCCUGgaGGCUAuacuGGGGAAaaaGACUg -3'
miRNA:   3'- gACGGAUgaCCGGUu---UUUCUUg--CUGG- -5'
27233 5' -49 NC_005832.1 + 90044 0.66 0.993614
Target:  5'- -cGCCaACcccgagaUGGCCAGGcugggaggaggaguGAGGugGGCCg -3'
miRNA:   3'- gaCGGaUG-------ACCGGUUU--------------UUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 90355 0.68 0.982125
Target:  5'- gUGCC---UGGCCuuGGGGAugGgACCa -3'
miRNA:   3'- gACGGaugACCGGuuUUUCUugC-UGG- -5'
27233 5' -49 NC_005832.1 + 91301 0.71 0.929028
Target:  5'- uCUGCCUGgccacguccagcUUGGCCAu----GACGGCCg -3'
miRNA:   3'- -GACGGAU------------GACCGGUuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 91440 0.7 0.949326
Target:  5'- -gGCCgucaUGGCCAAGcuGGACGugGCCa -3'
miRNA:   3'- gaCGGaug-ACCGGUUUuuCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 93670 0.68 0.982125
Target:  5'- -cGCCUAC--GCCGAuAAGGGCaaGGCCa -3'
miRNA:   3'- gaCGGAUGacCGGUUuUUCUUG--CUGG- -5'
27233 5' -49 NC_005832.1 + 94825 0.66 0.993012
Target:  5'- cCUGUCUA--GGCUAAAGucuGCGGCCu -3'
miRNA:   3'- -GACGGAUgaCCGGUUUUucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 95955 0.69 0.968708
Target:  5'- gCUGCg-GC-GGUC-AAGGGAGCGGCCg -3'
miRNA:   3'- -GACGgaUGaCCGGuUUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 96162 0.71 0.917221
Target:  5'- uUGCCaccagGgUGGCCGucAAGAGCG-CCa -3'
miRNA:   3'- gACGGa----UgACCGGUuuUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 96663 0.7 0.944662
Target:  5'- cCUGCUguguccaggGCuUGGCCGAGGAGGcCGGCa -3'
miRNA:   3'- -GACGGa--------UG-ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 96766 0.77 0.636153
Target:  5'- -cGUCagggagaUGCUGGCCAAGGuGGACGGCCu -3'
miRNA:   3'- gaCGG-------AUGACCGGUUUUuCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 97232 1.13 0.004881
Target:  5'- cCUGCCUACUGGCCAAAAAGAACGACCu -3'
miRNA:   3'- -GACGGAUGACCGGUUUUUCUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.