miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 56402 0.68 0.970923
Target:  5'- cCU-CCUGCcGGCCAGGAaccccacucccacgGGAGCGcCCa -3'
miRNA:   3'- -GAcGGAUGaCCGGUUUU--------------UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 54792 0.67 0.984184
Target:  5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3'
miRNA:   3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 54557 0.67 0.983788
Target:  5'- -gGCCcgacguaaagugGCUGGUguugugCAAGAGGGugGACCa -3'
miRNA:   3'- gaCGGa-----------UGACCG------GUUUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 53584 0.68 0.97741
Target:  5'- -gGUCUACaGGCuCAuAGAGAGCaACCa -3'
miRNA:   3'- gaCGGAUGaCCG-GUuUUUCUUGcUGG- -5'
27233 5' -49 NC_005832.1 + 53321 0.67 0.986059
Target:  5'- -gGCCUACagGGCCAu--GGAuuuCGAgCCc -3'
miRNA:   3'- gaCGGAUGa-CCGGUuuuUCUu--GCU-GG- -5'
27233 5' -49 NC_005832.1 + 53061 0.66 0.991909
Target:  5'- -cGUCUGC-GGCCu-AGAGAugGucGCCg -3'
miRNA:   3'- gaCGGAUGaCCGGuuUUUCUugC--UGG- -5'
27233 5' -49 NC_005832.1 + 52223 0.71 0.910903
Target:  5'- uUGCC-AC-GGCCAGGAGccACGACCc -3'
miRNA:   3'- gACGGaUGaCCGGUUUUUcuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 52073 0.7 0.938706
Target:  5'- uCUGCaCUGCguccaccaugucGGCCuuGGAGAugGACUu -3'
miRNA:   3'- -GACG-GAUGa-----------CCGGuuUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 50353 0.8 0.496859
Target:  5'- gUGCUgggACgaagUGGCCAAAAAGGACGACa -3'
miRNA:   3'- gACGGa--UG----ACCGGUUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 48857 0.66 0.994857
Target:  5'- -cGCCcaa-GGCCGucGAGuGCGACCu -3'
miRNA:   3'- gaCGGaugaCCGGUuuUUCuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 47707 0.7 0.934515
Target:  5'- -gGCCgcgagGCcGGCCAAGGAGAG-GAUCa -3'
miRNA:   3'- gaCGGa----UGaCCGGUUUUUCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 47491 0.69 0.957851
Target:  5'- -gGCCUAC--GCCAcgaGAAAGAugGACg -3'
miRNA:   3'- gaCGGAUGacCGGU---UUUUCUugCUGg -5'
27233 5' -49 NC_005832.1 + 47312 0.73 0.824311
Target:  5'- -aGUCUACU-GCCAcugugAAAAGAACGGCUa -3'
miRNA:   3'- gaCGGAUGAcCGGU-----UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 46255 0.73 0.859211
Target:  5'- gUGuCCUGaUGGCCAGGAGGGACaacucuGGCCu -3'
miRNA:   3'- gAC-GGAUgACCGGUUUUUCUUG------CUGG- -5'
27233 5' -49 NC_005832.1 + 45795 0.66 0.991673
Target:  5'- gUGaCCggggaGCUGaGCCAucaccagcuuguAGAGGACGGCCa -3'
miRNA:   3'- gAC-GGa----UGAC-CGGUu-----------UUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 43146 0.73 0.850822
Target:  5'- -gGCCgUGCUGGCCAccgucaggcuggGAAAGGGCcuGCCg -3'
miRNA:   3'- gaCGG-AUGACCGGU------------UUUUCUUGc-UGG- -5'
27233 5' -49 NC_005832.1 + 41851 0.66 0.994857
Target:  5'- -aGCUcACcccggcgaUGGCCAGGAGGAcCGACg -3'
miRNA:   3'- gaCGGaUG--------ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 41747 0.69 0.961721
Target:  5'- -gGCCaUGgUGGCCAGGGAGAA--ACCc -3'
miRNA:   3'- gaCGG-AUgACCGGUUUUUCUUgcUGG- -5'
27233 5' -49 NC_005832.1 + 40846 0.69 0.968708
Target:  5'- cCUGCCgUAgaGGCCcGGGGGcaucuuuACGGCCa -3'
miRNA:   3'- -GACGG-AUgaCCGGuUUUUCu------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 40837 0.66 0.995619
Target:  5'- --cCCUuuuCgGGUCGAGAGGGGCGACa -3'
miRNA:   3'- gacGGAu--GaCCGGUUUUUCUUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.