miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 96663 0.7 0.944662
Target:  5'- cCUGCUguguccaggGCuUGGCCGAGGAGGcCGGCa -3'
miRNA:   3'- -GACGGa--------UG-ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 52073 0.7 0.938706
Target:  5'- uCUGCaCUGCguccaccaugucGGCCuuGGAGAugGACUu -3'
miRNA:   3'- -GACG-GAUGa-----------CCGGuuUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 91301 0.71 0.929028
Target:  5'- uCUGCCUGgccacguccagcUUGGCCAu----GACGGCCg -3'
miRNA:   3'- -GACGGAU------------GACCGGUuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 91440 0.7 0.949326
Target:  5'- -gGCCgucaUGGCCAAGcuGGACGugGCCa -3'
miRNA:   3'- gaCGGaug-ACCGGUUUuuCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 74329 0.7 0.949326
Target:  5'- -aGCCUcgUGGCCAGccucuuGCGACCg -3'
miRNA:   3'- gaCGGAugACCGGUUuuucu-UGCUGG- -5'
27233 5' -49 NC_005832.1 + 13904 0.7 0.953721
Target:  5'- gCUGCCUACccugguacucgaUGGCCGucuuGAGgGACUu -3'
miRNA:   3'- -GACGGAUG------------ACCGGUuuuuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 47491 0.69 0.957851
Target:  5'- -gGCCUAC--GCCAcgaGAAAGAugGACg -3'
miRNA:   3'- gaCGGAUGacCGGU---UUUUCUugCUGg -5'
27233 5' -49 NC_005832.1 + 89420 0.69 0.961721
Target:  5'- gUGCCUGgaGGCUAuacuGGGGAAaaaGACUg -3'
miRNA:   3'- gACGGAUgaCCGGUu---UUUCUUg--CUGG- -5'
27233 5' -49 NC_005832.1 + 79000 0.69 0.961721
Target:  5'- uCUGCCaccCUGGCCGcAAAguccuccgguGGAACGugCc -3'
miRNA:   3'- -GACGGau-GACCGGU-UUU----------UCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 17596 0.69 0.961721
Target:  5'- gCUGCCgucuCUGGCCGccAAGAuguCGGgCa -3'
miRNA:   3'- -GACGGau--GACCGGUuuUUCUu--GCUgG- -5'
27233 5' -49 NC_005832.1 + 32594 0.7 0.944662
Target:  5'- gCUGCCg--UGGCCGAcuuu-GCGGCCa -3'
miRNA:   3'- -GACGGaugACCGGUUuuucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 47707 0.7 0.934515
Target:  5'- -gGCCgcgagGCcGGCCAAGGAGAG-GAUCa -3'
miRNA:   3'- gaCGGa----UGaCCGGUUUUUCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 9632 0.71 0.917221
Target:  5'- -gGCCUGCguucaGGCCAGGGccGACGGCa -3'
miRNA:   3'- gaCGGAUGa----CCGGUUUUucUUGCUGg -5'
27233 5' -49 NC_005832.1 + 102465 0.72 0.896745
Target:  5'- uUGCgcaUGCUGGCCAGGuauucuuuaaucuGAGcGGCGGCCu -3'
miRNA:   3'- gACGg--AUGACCGGUUU-------------UUC-UUGCUGG- -5'
27233 5' -49 NC_005832.1 + 11516 0.72 0.890315
Target:  5'- gCUGCauagucCUGGCC-AGGGGAGCGGCg -3'
miRNA:   3'- -GACGgau---GACCGGuUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 46255 0.73 0.859211
Target:  5'- gUGuCCUGaUGGCCAGGAGGGACaacucuGGCCu -3'
miRNA:   3'- gAC-GGAUgACCGGUUUUUCUUG------CUGG- -5'
27233 5' -49 NC_005832.1 + 37186 0.73 0.832468
Target:  5'- uCUGCCguucUUGGCCAggcacagGAAAGAGCcGCCa -3'
miRNA:   3'- -GACGGau--GACCGGU-------UUUUCUUGcUGG- -5'
27233 5' -49 NC_005832.1 + 47312 0.73 0.824311
Target:  5'- -aGUCUACU-GCCAcugugAAAAGAACGGCUa -3'
miRNA:   3'- gaCGGAUGAcCGGU-----UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 15178 0.74 0.805608
Target:  5'- -cGCCUGcCUGGCCGgAGGAGAcaACG-CCu -3'
miRNA:   3'- gaCGGAU-GACCGGU-UUUUCU--UGCuGG- -5'
27233 5' -49 NC_005832.1 + 75714 0.66 0.995619
Target:  5'- cCUGUCUGC-GGCCGu-GGGGAgGugUa -3'
miRNA:   3'- -GACGGAUGaCCGGUuuUUCUUgCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.