miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 649 0.68 0.97741
Target:  5'- -cGCCggggGCUGGUgCAGAAAGugguacuCGGCCc -3'
miRNA:   3'- gaCGGa---UGACCG-GUUUUUCuu-----GCUGG- -5'
27233 5' -49 NC_005832.1 + 32814 0.68 0.971838
Target:  5'- gUGCCUGgucucgGGCCuGAAgggaaggacguuGGGACGGCCu -3'
miRNA:   3'- gACGGAUga----CCGGuUUU------------UCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 91440 0.7 0.949326
Target:  5'- -gGCCgucaUGGCCAAGcuGGACGugGCCa -3'
miRNA:   3'- gaCGGaug-ACCGGUUUuuCUUGC--UGG- -5'
27233 5' -49 NC_005832.1 + 37186 0.73 0.832468
Target:  5'- uCUGCCguucUUGGCCAggcacagGAAAGAGCcGCCa -3'
miRNA:   3'- -GACGGau--GACCGGU-------UUUUCUUGcUGG- -5'
27233 5' -49 NC_005832.1 + 90044 0.66 0.993614
Target:  5'- -cGCCaACcccgagaUGGCCAGGcugggaggaggaguGAGGugGGCCg -3'
miRNA:   3'- gaCGGaUG-------ACCGGUUU--------------UUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 20216 0.67 0.984184
Target:  5'- uCUGCCgccaUGuCCAGGAaaGGGugGACCa -3'
miRNA:   3'- -GACGGaug-ACcGGUUUU--UCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 33719 0.69 0.961721
Target:  5'- aUGCUgGC-GGCCAAAGgcAGGGCGuCCa -3'
miRNA:   3'- gACGGaUGaCCGGUUUU--UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 47312 0.73 0.824311
Target:  5'- -aGUCUACU-GCCAcugugAAAAGAACGGCUa -3'
miRNA:   3'- gaCGGAUGAcCGGU-----UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 32907 0.68 0.982125
Target:  5'- gUGCCUGgucucgGGCCuGAAGGGAAgGACg -3'
miRNA:   3'- gACGGAUga----CCGG-UUUUUCUUgCUGg -5'
27233 5' -49 NC_005832.1 + 15178 0.74 0.805608
Target:  5'- -cGCCUGcCUGGCCGgAGGAGAcaACG-CCu -3'
miRNA:   3'- gaCGGAU-GACCGGU-UUUUCU--UGCuGG- -5'
27233 5' -49 NC_005832.1 + 95955 0.69 0.968708
Target:  5'- gCUGCg-GC-GGUC-AAGGGAGCGGCCg -3'
miRNA:   3'- -GACGgaUGaCCGGuUUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 71671 0.68 0.97987
Target:  5'- aCUGCCacgACUgcagacagGGCCAc-GAGGGCGGCg -3'
miRNA:   3'- -GACGGa--UGA--------CCGGUuuUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 89420 0.69 0.961721
Target:  5'- gUGCCUGgaGGCUAuacuGGGGAAaaaGACUg -3'
miRNA:   3'- gACGGAUgaCCGGUu---UUUCUUg--CUGG- -5'
27233 5' -49 NC_005832.1 + 74329 0.7 0.949326
Target:  5'- -aGCCUcgUGGCCAGccucuuGCGACCg -3'
miRNA:   3'- gaCGGAugACCGGUUuuucu-UGCUGG- -5'
27233 5' -49 NC_005832.1 + 9632 0.71 0.917221
Target:  5'- -gGCCUGCguucaGGCCAGGGccGACGGCa -3'
miRNA:   3'- gaCGGAUGa----CCGGUUUUucUUGCUGg -5'
27233 5' -49 NC_005832.1 + 46255 0.73 0.859211
Target:  5'- gUGuCCUGaUGGCCAGGAGGGACaacucuGGCCu -3'
miRNA:   3'- gAC-GGAUgACCGGUUUUUCUUG------CUGG- -5'
27233 5' -49 NC_005832.1 + 11036 0.66 0.995174
Target:  5'- -aGCCcgacgaGCUGGCCGAGAGGGucagggggagggugaGCuACCu -3'
miRNA:   3'- gaCGGa-----UGACCGGUUUUUCU---------------UGcUGG- -5'
27233 5' -49 NC_005832.1 + 87412 0.66 0.993991
Target:  5'- -gGCUg--UGGCCGAAGuGGAgGGCCa -3'
miRNA:   3'- gaCGGaugACCGGUUUUuCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 98356 0.67 0.987266
Target:  5'- gUGUCgggGCU-GCCAugaucaccagggacAGGAGGACGGCCu -3'
miRNA:   3'- gACGGa--UGAcCGGU--------------UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 11694 0.67 0.984184
Target:  5'- -cGCCaUGaggagGGCCGuccAGGACGACCc -3'
miRNA:   3'- gaCGG-AUga---CCGGUuuuUCUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.