miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 40837 0.66 0.995619
Target:  5'- --cCCUuuuCgGGUCGAGAGGGGCGACa -3'
miRNA:   3'- gacGGAu--GaCCGGUUUUUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 53061 0.66 0.991909
Target:  5'- -cGUCUGC-GGCCu-AGAGAugGucGCCg -3'
miRNA:   3'- gaCGGAUGaCCGGuuUUUCUugC--UGG- -5'
27233 5' -49 NC_005832.1 + 65634 0.66 0.995619
Target:  5'- cCUGCCggcCUGGaaggaCAGGAAGGcccUGGCCg -3'
miRNA:   3'- -GACGGau-GACCg----GUUUUUCUu--GCUGG- -5'
27233 5' -49 NC_005832.1 + 65337 0.67 0.987758
Target:  5'- -gGcCCUGCaGGaCGAGAGGGACGugCc -3'
miRNA:   3'- gaC-GGAUGaCCgGUUUUUCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 96766 0.77 0.636153
Target:  5'- -cGUCagggagaUGCUGGCCAAGGuGGACGGCCu -3'
miRNA:   3'- gaCGG-------AUGACCGGUUUUuCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 54792 0.67 0.984184
Target:  5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3'
miRNA:   3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 37059 0.67 0.984184
Target:  5'- gUGCC---UGGCCA---AGAACGGCa -3'
miRNA:   3'- gACGGaugACCGGUuuuUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 6934 0.75 0.745475
Target:  5'- uCUGCCUACgacGGCaCAGuGAGGGACG-CCa -3'
miRNA:   3'- -GACGGAUGa--CCG-GUU-UUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 78206 0.74 0.805608
Target:  5'- uCUGCUagg-GGCCGuagaggGAAAGGACGACCu -3'
miRNA:   3'- -GACGGaugaCCGGU------UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 56750 0.67 0.987758
Target:  5'- -gGCgUACUGcGCCAGGuuuAGGccagacaccGCGGCCu -3'
miRNA:   3'- gaCGgAUGAC-CGGUUUu--UCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 54557 0.67 0.983788
Target:  5'- -gGCCcgacguaaagugGCUGGUguugugCAAGAGGGugGACCa -3'
miRNA:   3'- gaCGGa-----------UGACCG------GUUUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 90355 0.68 0.982125
Target:  5'- gUGCC---UGGCCuuGGGGAugGgACCa -3'
miRNA:   3'- gACGGaugACCGGuuUUUCUugC-UGG- -5'
27233 5' -49 NC_005832.1 + 87429 0.68 0.982125
Target:  5'- -gGCauCUGCUGGCCAu--GGAcccgGCGGCa -3'
miRNA:   3'- gaCG--GAUGACCGGUuuuUCU----UGCUGg -5'
27233 5' -49 NC_005832.1 + 96162 0.71 0.917221
Target:  5'- uUGCCaccagGgUGGCCGucAAGAGCG-CCa -3'
miRNA:   3'- gACGGa----UgACCGGUuuUUCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 91301 0.71 0.929028
Target:  5'- uCUGCCUGgccacguccagcUUGGCCAu----GACGGCCg -3'
miRNA:   3'- -GACGGAU------------GACCGGUuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 52073 0.7 0.938706
Target:  5'- uCUGCaCUGCguccaccaugucGGCCuuGGAGAugGACUu -3'
miRNA:   3'- -GACG-GAUGa-----------CCGGuuUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 96663 0.7 0.944662
Target:  5'- cCUGCUguguccaggGCuUGGCCGAGGAGGcCGGCa -3'
miRNA:   3'- -GACGGa--------UG-ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 26334 0.7 0.949326
Target:  5'- uCUGCCcGgUGGCCucgccGGGGACGAUg -3'
miRNA:   3'- -GACGGaUgACCGGuuu--UUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 11539 0.68 0.97987
Target:  5'- -aGCuuCUGgUGGCCAAAGGcggggucguccuGGACGGCCc -3'
miRNA:   3'- gaCG--GAUgACCGGUUUUU------------CUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 87736 0.68 0.974735
Target:  5'- -cGCCUACaaccUGGCCAucAGGAGAAUGuuuGCa -3'
miRNA:   3'- gaCGGAUG----ACCGGU--UUUUCUUGC---UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.