miRNA display CGI


Results 61 - 80 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 7556 0.75 0.734983
Target:  5'- cCUGgaCCUGCUGGCCGuc-AGAcccagcACGGCCa -3'
miRNA:   3'- -GAC--GGAUGACCGGUuuuUCU------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 11539 0.68 0.97987
Target:  5'- -aGCuuCUGgUGGCCAAAGGcggggucguccuGGACGGCCc -3'
miRNA:   3'- gaCG--GAUgACCGGUUUUU------------CUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 87429 0.68 0.982125
Target:  5'- -gGCauCUGCUGGCCAu--GGAcccgGCGGCa -3'
miRNA:   3'- gaCG--GAUGACCGGUuuuUCU----UGCUGg -5'
27233 5' -49 NC_005832.1 + 90355 0.68 0.982125
Target:  5'- gUGCC---UGGCCuuGGGGAugGgACCa -3'
miRNA:   3'- gACGGaugACCGGuuUUUCUugC-UGG- -5'
27233 5' -49 NC_005832.1 + 48857 0.66 0.994857
Target:  5'- -cGCCcaa-GGCCGucGAGuGCGACCu -3'
miRNA:   3'- gaCGGaugaCCGGUuuUUCuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 66969 0.66 0.994857
Target:  5'- gCUGCCUGgUGucuuGCauccucAGGACGGCCa -3'
miRNA:   3'- -GACGGAUgAC----CGguuuu-UCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 41851 0.66 0.994857
Target:  5'- -aGCUcACcccggcgaUGGCCAGGAGGAcCGACg -3'
miRNA:   3'- gaCGGaUG--------ACCGGUUUUUCUuGCUGg -5'
27233 5' -49 NC_005832.1 + 74892 0.66 0.994775
Target:  5'- -gGCC--CUGGCCGAAAAGuacAGCGgaugcaaGCCg -3'
miRNA:   3'- gaCGGauGACCGGUUUUUC---UUGC-------UGG- -5'
27233 5' -49 NC_005832.1 + 27548 0.66 0.99435
Target:  5'- -aGCCUGCUcgaagacaccuucgaGGCCuuccuGGGAgcggugugcACGGCCg -3'
miRNA:   3'- gaCGGAUGA---------------CCGGuuu--UUCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 94825 0.66 0.993012
Target:  5'- cCUGUCUA--GGCUAAAGucuGCGGCCu -3'
miRNA:   3'- -GACGGAUgaCCGGUUUUucuUGCUGG- -5'
27233 5' -49 NC_005832.1 + 36009 0.66 0.993012
Target:  5'- gUGCCUAgagGGCCu-----GACGGCCg -3'
miRNA:   3'- gACGGAUga-CCGGuuuuucUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 81287 0.66 0.991909
Target:  5'- -aGCCcucACUugGGCCA---AGAGCGGCUa -3'
miRNA:   3'- gaCGGa--UGA--CCGGUuuuUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 45795 0.66 0.991673
Target:  5'- gUGaCCggggaGCUGaGCCAucaccagcuuguAGAGGACGGCCa -3'
miRNA:   3'- gAC-GGa----UGAC-CGGUu-----------UUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 97276 0.67 0.989862
Target:  5'- -aGCCUGgccggccucgaggccCUGGUCGcaaAGAAGGACGAgCu -3'
miRNA:   3'- gaCGGAU---------------GACCGGU---UUUUCUUGCUgG- -5'
27233 5' -49 NC_005832.1 + 1112 0.67 0.989146
Target:  5'- -gGCCUGgUGGCCcAGccggcgucccgcGAGGAcaggucgGCGGCCu -3'
miRNA:   3'- gaCGGAUgACCGG-UU------------UUUCU-------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 65337 0.67 0.987758
Target:  5'- -gGcCCUGCaGGaCGAGAGGGACGugCc -3'
miRNA:   3'- gaC-GGAUGaCCgGUUUUUCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 76395 0.67 0.98438
Target:  5'- -gGCCUcuacuacuugaggacCUGcGCCGGGAGGAcCGGCCa -3'
miRNA:   3'- gaCGGAu--------------GAC-CGGUUUUUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 54792 0.67 0.984184
Target:  5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3'
miRNA:   3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 37059 0.67 0.984184
Target:  5'- gUGCC---UGGCCA---AGAACGGCa -3'
miRNA:   3'- gACGGaugACCGGUuuuUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 54557 0.67 0.983788
Target:  5'- -gGCCcgacguaaagugGCUGGUguugugCAAGAGGGugGACCa -3'
miRNA:   3'- gaCGGa-----------UGACCG------GUUUUUCUugCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.