Results 81 - 85 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27233 | 5' | -49 | NC_005832.1 | + | 54792 | 0.67 | 0.984184 |
Target: 5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3' miRNA: 3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5' |
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27233 | 5' | -49 | NC_005832.1 | + | 76395 | 0.67 | 0.98438 |
Target: 5'- -gGCCUcuacuacuugaggacCUGcGCCGGGAGGAcCGGCCa -3' miRNA: 3'- gaCGGAu--------------GAC-CGGUUUUUCUuGCUGG- -5' |
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27233 | 5' | -49 | NC_005832.1 | + | 65337 | 0.67 | 0.987758 |
Target: 5'- -gGcCCUGCaGGaCGAGAGGGACGugCc -3' miRNA: 3'- gaC-GGAUGaCCgGUUUUUCUUGCugG- -5' |
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27233 | 5' | -49 | NC_005832.1 | + | 56750 | 0.67 | 0.987758 |
Target: 5'- -gGCgUACUGcGCCAGGuuuAGGccagacaccGCGGCCu -3' miRNA: 3'- gaCGgAUGAC-CGGUUUu--UCU---------UGCUGG- -5' |
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27233 | 5' | -49 | NC_005832.1 | + | 65634 | 0.66 | 0.995619 |
Target: 5'- cCUGCCggcCUGGaaggaCAGGAAGGcccUGGCCg -3' miRNA: 3'- -GACGGau-GACCg----GUUUUUCUu--GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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