miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27233 5' -49 NC_005832.1 + 1112 0.67 0.989146
Target:  5'- -gGCCUGgUGGCCcAGccggcgucccgcGAGGAcaggucgGCGGCCu -3'
miRNA:   3'- gaCGGAUgACCGG-UU------------UUUCU-------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 102074 0.67 0.987758
Target:  5'- -gGCCU--UGGCCAGGGucuGGGCGGuCCc -3'
miRNA:   3'- gaCGGAugACCGGUUUUu--CUUGCU-GG- -5'
27233 5' -49 NC_005832.1 + 56750 0.67 0.987758
Target:  5'- -gGCgUACUGcGCCAGGuuuAGGccagacaccGCGGCCu -3'
miRNA:   3'- gaCGgAUGAC-CGGUUUu--UCU---------UGCUGG- -5'
27233 5' -49 NC_005832.1 + 65337 0.67 0.987758
Target:  5'- -gGcCCUGCaGGaCGAGAGGGACGugCc -3'
miRNA:   3'- gaC-GGAUGaCCgGUUUUUCUUGCugG- -5'
27233 5' -49 NC_005832.1 + 98356 0.67 0.987266
Target:  5'- gUGUCgggGCU-GCCAugaucaccagggacAGGAGGACGGCCu -3'
miRNA:   3'- gACGGa--UGAcCGGU--------------UUUUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 103736 0.67 0.986759
Target:  5'- -cGCCaGCUGGUgGAGcugagugcagcccauGAGAuCGGCCa -3'
miRNA:   3'- gaCGGaUGACCGgUUU---------------UUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 53321 0.67 0.986059
Target:  5'- -gGCCUACagGGCCAu--GGAuuuCGAgCCc -3'
miRNA:   3'- gaCGGAUGa-CCGGUuuuUCUu--GCU-GG- -5'
27233 5' -49 NC_005832.1 + 76395 0.67 0.98438
Target:  5'- -gGCCUcuacuacuugaggacCUGcGCCGGGAGGAcCGGCCa -3'
miRNA:   3'- gaCGGAu--------------GAC-CGGUUUUUCUuGCUGG- -5'
27233 5' -49 NC_005832.1 + 11694 0.67 0.984184
Target:  5'- -cGCCaUGaggagGGCCGuccAGGACGACCc -3'
miRNA:   3'- gaCGG-AUga---CCGGUuuuUCUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 20216 0.67 0.984184
Target:  5'- uCUGCCgccaUGuCCAGGAaaGGGugGACCa -3'
miRNA:   3'- -GACGGaug-ACcGGUUUU--UCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 37059 0.67 0.984184
Target:  5'- gUGCC---UGGCCA---AGAACGGCa -3'
miRNA:   3'- gACGGaugACCGGUuuuUCUUGCUGg -5'
27233 5' -49 NC_005832.1 + 54792 0.67 0.984184
Target:  5'- gUGCCUggGCaGGCUAAGGgccgacGGGGgGACCg -3'
miRNA:   3'- gACGGA--UGaCCGGUUUU------UCUUgCUGG- -5'
27233 5' -49 NC_005832.1 + 54557 0.67 0.983788
Target:  5'- -gGCCcgacguaaagugGCUGGUguugugCAAGAGGGugGACCa -3'
miRNA:   3'- gaCGGa-----------UGACCG------GUUUUUCUugCUGG- -5'
27233 5' -49 NC_005832.1 + 10879 0.68 0.982125
Target:  5'- -cGCCUACgccucGGCCuGGGAccAGGACG-CCg -3'
miRNA:   3'- gaCGGAUGa----CCGG-UUUU--UCUUGCuGG- -5'
27233 5' -49 NC_005832.1 + 90355 0.68 0.982125
Target:  5'- gUGCC---UGGCCuuGGGGAugGgACCa -3'
miRNA:   3'- gACGGaugACCGGuuUUUCUugC-UGG- -5'
27233 5' -49 NC_005832.1 + 87429 0.68 0.982125
Target:  5'- -gGCauCUGCUGGCCAu--GGAcccgGCGGCa -3'
miRNA:   3'- gaCG--GAUGACCGGUuuuUCU----UGCUGg -5'
27233 5' -49 NC_005832.1 + 93670 0.68 0.982125
Target:  5'- -cGCCUAC--GCCGAuAAGGGCaaGGCCa -3'
miRNA:   3'- gaCGGAUGacCGGUUuUUCUUG--CUGG- -5'
27233 5' -49 NC_005832.1 + 32907 0.68 0.982125
Target:  5'- gUGCCUGgucucgGGCCuGAAGGGAAgGACg -3'
miRNA:   3'- gACGGAUga----CCGG-UUUUUCUUgCUGg -5'
27233 5' -49 NC_005832.1 + 11539 0.68 0.97987
Target:  5'- -aGCuuCUGgUGGCCAAAGGcggggucguccuGGACGGCCc -3'
miRNA:   3'- gaCG--GAUgACCGGUUUUU------------CUUGCUGG- -5'
27233 5' -49 NC_005832.1 + 71671 0.68 0.97987
Target:  5'- aCUGCCacgACUgcagacagGGCCAc-GAGGGCGGCg -3'
miRNA:   3'- -GACGGa--UGA--------CCGGUuuUUCUUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.