miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27234 5' -53.6 NC_005832.1 + 98226 0.66 0.935201
Target:  5'- --cUCGGGCAUGAgcuCCAgcacGGGCCucUugGAg -3'
miRNA:   3'- cacAGCCUGUACU---GGU----UCCGG--AugCU- -5'
27234 5' -53.6 NC_005832.1 + 96668 0.66 0.935201
Target:  5'- uGUGUCcaGGGCuUGGCCGaggAGGCCgGCa- -3'
miRNA:   3'- -CACAG--CCUGuACUGGU---UCCGGaUGcu -5'
27234 5' -53.6 NC_005832.1 + 1586 0.66 0.91861
Target:  5'- aUGaCGGcUGUGGCCAugaGGGCCUGCu- -3'
miRNA:   3'- cACaGCCuGUACUGGU---UCCGGAUGcu -5'
27234 5' -53.6 NC_005832.1 + 101057 0.66 0.91861
Target:  5'- gGUGU-GGGCcgAUGACUggGG-CUACGAu -3'
miRNA:   3'- -CACAgCCUG--UACUGGuuCCgGAUGCU- -5'
27234 5' -53.6 NC_005832.1 + 102091 0.66 0.906256
Target:  5'- uUGUCGGccuuuugcuugGCcuUGGCCAGGGUCUggGCGGu -3'
miRNA:   3'- cACAGCC-----------UGu-ACUGGUUCCGGA--UGCU- -5'
27234 5' -53.6 NC_005832.1 + 81148 0.67 0.885822
Target:  5'- -aGUUGGGCAccagggaGGCCGAGGCgUACu- -3'
miRNA:   3'- caCAGCCUGUa------CUGGUUCCGgAUGcu -5'
27234 5' -53.6 NC_005832.1 + 81460 0.67 0.878518
Target:  5'- -aGUCGGGCGUaauaauauaCAGGGCCUcCGAg -3'
miRNA:   3'- caCAGCCUGUAcug------GUUCCGGAuGCU- -5'
27234 5' -53.6 NC_005832.1 + 46430 0.67 0.878518
Target:  5'- cUGUgGGACAaggcggUGGCCGuGGCCaagGCGGu -3'
miRNA:   3'- cACAgCCUGU------ACUGGUuCCGGa--UGCU- -5'
27234 5' -53.6 NC_005832.1 + 7934 0.68 0.863988
Target:  5'- cGUGUgGGACGUGuacgagacccugggGCUggcggcggccaaaaaGAGGCUUACGAg -3'
miRNA:   3'- -CACAgCCUGUAC--------------UGG---------------UUCCGGAUGCU- -5'
27234 5' -53.6 NC_005832.1 + 6076 0.68 0.8632
Target:  5'- cGUcUCGGACcUGGCCuGGGgacCCUGCGGg -3'
miRNA:   3'- -CAcAGCCUGuACUGGuUCC---GGAUGCU- -5'
27234 5' -53.6 NC_005832.1 + 81372 0.69 0.812058
Target:  5'- uGUGUCaaGGGCAUGaaaccaGCCAAGGUgcGCGAg -3'
miRNA:   3'- -CACAG--CCUGUAC------UGGUUCCGgaUGCU- -5'
27234 5' -53.6 NC_005832.1 + 21307 0.69 0.802863
Target:  5'- uUGUCGGACGccacuauCCGAGGCUcgGCGGu -3'
miRNA:   3'- cACAGCCUGUacu----GGUUCCGGa-UGCU- -5'
27234 5' -53.6 NC_005832.1 + 3220 0.7 0.744513
Target:  5'- -cGUCGGAU---GCCugauGGCCUACGGg -3'
miRNA:   3'- caCAGCCUGuacUGGuu--CCGGAUGCU- -5'
27234 5' -53.6 NC_005832.1 + 38658 0.7 0.724098
Target:  5'- -cGUgGGuCGUGACCGAGGaCCUcauCGAg -3'
miRNA:   3'- caCAgCCuGUACUGGUUCC-GGAu--GCU- -5'
27234 5' -53.6 NC_005832.1 + 36580 0.71 0.703339
Target:  5'- gGUG-CGGAaaggcCAUGACCGAGGCCgccaggguCGGa -3'
miRNA:   3'- -CACaGCCU-----GUACUGGUUCCGGau------GCU- -5'
27234 5' -53.6 NC_005832.1 + 31050 0.71 0.6897
Target:  5'- cUGUCGGugGUGgggugguucuGCCAugucaggugcgucaAGGCCUACGc -3'
miRNA:   3'- cACAGCCugUAC----------UGGU--------------UCCGGAUGCu -5'
27234 5' -53.6 NC_005832.1 + 11704 0.71 0.671737
Target:  5'- -cGUCGGACGUcGCCAugaggaGGGCCguccaggACGAc -3'
miRNA:   3'- caCAGCCUGUAcUGGU------UCCGGa------UGCU- -5'
27234 5' -53.6 NC_005832.1 + 97347 0.75 0.464089
Target:  5'- -aGUaggcaGGACAcGGCCGAGGCCUGCu- -3'
miRNA:   3'- caCAg----CCUGUaCUGGUUCCGGAUGcu -5'
27234 5' -53.6 NC_005832.1 + 48436 0.76 0.435506
Target:  5'- aUGUCaGGcCGUGACCAGGGcCCUGCa- -3'
miRNA:   3'- cACAG-CCuGUACUGGUUCC-GGAUGcu -5'
27234 5' -53.6 NC_005832.1 + 97713 1.09 0.003182
Target:  5'- gGUGUCGGACAUGACCAAGGCCUACGAg -3'
miRNA:   3'- -CACAGCCUGUACUGGUUCCGGAUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.