miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 3' -51.8 NC_005832.1 + 43182 0.67 0.94878
Target:  5'- gCCGGgcuucuuugagGGCGcUCCCgCCAGgcuGGCGUggUCCg -3'
miRNA:   3'- gGGCU-----------UCGU-AGGG-GGUU---UCGCAa-AGG- -5'
27235 3' -51.8 NC_005832.1 + 52382 0.67 0.944237
Target:  5'- cCUCGuAGCAgagcauccucUCCUCCAGGGaagGUUUCCc -3'
miRNA:   3'- -GGGCuUCGU----------AGGGGGUUUCg--CAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 27066 0.67 0.944237
Target:  5'- aCCCGGAGCccccUUCUCCGuacuccucgacGAGCGccgcgUUCCa -3'
miRNA:   3'- -GGGCUUCGu---AGGGGGU-----------UUCGCa----AAGG- -5'
27235 3' -51.8 NC_005832.1 + 21226 0.68 0.939439
Target:  5'- gCCGggGCGUCCCUacGGGCc---CCg -3'
miRNA:   3'- gGGCuuCGUAGGGGguUUCGcaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 65796 0.68 0.934382
Target:  5'- gCCCGugcuGgAUCCCCUGAAGaCGg--CCa -3'
miRNA:   3'- -GGGCuu--CgUAGGGGGUUUC-GCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 36563 0.68 0.934382
Target:  5'- aCCGAGGCcgCCagggUCGGAGUGU-UCCu -3'
miRNA:   3'- gGGCUUCGuaGGg---GGUUUCGCAaAGG- -5'
27235 3' -51.8 NC_005832.1 + 45459 0.68 0.934382
Target:  5'- uUCGggGCAggCCCUCAGAGUcuuuaugUCCu -3'
miRNA:   3'- gGGCuuCGUa-GGGGGUUUCGcaa----AGG- -5'
27235 3' -51.8 NC_005832.1 + 55692 0.68 0.933862
Target:  5'- gCCGGacaguguGGCGUCCUCCGAGaUGUcUCCu -3'
miRNA:   3'- gGGCU-------UCGUAGGGGGUUUcGCAaAGG- -5'
27235 3' -51.8 NC_005832.1 + 87500 0.68 0.923491
Target:  5'- aCCaGGgcAGCGUCCUCCAGgcuGGCGg--CCa -3'
miRNA:   3'- gGG-CU--UCGUAGGGGGUU---UCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 81095 0.69 0.90521
Target:  5'- aCCGAcGCcaCCCUCAGGGCGUacaCCa -3'
miRNA:   3'- gGGCUuCGuaGGGGGUUUCGCAaa-GG- -5'
27235 3' -51.8 NC_005832.1 + 94926 0.69 0.90521
Target:  5'- uCCCGAcAGUGUCUCCCGAucaggccGCGUcggCCc -3'
miRNA:   3'- -GGGCU-UCGUAGGGGGUUu------CGCAaa-GG- -5'
27235 3' -51.8 NC_005832.1 + 98142 0.69 0.898603
Target:  5'- uUCCGGAGaGUCUUCCAGAGaGUcUCCa -3'
miRNA:   3'- -GGGCUUCgUAGGGGGUUUCgCAaAGG- -5'
27235 3' -51.8 NC_005832.1 + 92419 0.7 0.877289
Target:  5'- gCCCaGAGCcgUCCCCGucGCG--UCCu -3'
miRNA:   3'- -GGGcUUCGuaGGGGGUuuCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 78658 0.7 0.861883
Target:  5'- uCCCGggGUucaagccCgCCCCAGAGUGg--CCg -3'
miRNA:   3'- -GGGCuuCGua-----G-GGGGUUUCGCaaaGG- -5'
27235 3' -51.8 NC_005832.1 + 42418 0.7 0.861883
Target:  5'- cCCCGAGGa---CCCCGuGGCGgaUCUg -3'
miRNA:   3'- -GGGCUUCguagGGGGUuUCGCaaAGG- -5'
27235 3' -51.8 NC_005832.1 + 95758 0.71 0.819555
Target:  5'- uCCUaGGAGaaugucUCCUgCCAGAGCGUUUCCa -3'
miRNA:   3'- -GGG-CUUCgu----AGGG-GGUUUCGCAAAGG- -5'
27235 3' -51.8 NC_005832.1 + 25424 0.72 0.772614
Target:  5'- -aCGuGAGCGUCUCCCAGAGUGUggaCa -3'
miRNA:   3'- ggGC-UUCGUAGGGGGUUUCGCAaagG- -5'
27235 3' -51.8 NC_005832.1 + 39783 0.72 0.752813
Target:  5'- --aGAGGC--CCCCCGGAGCGgugggUCCa -3'
miRNA:   3'- gggCUUCGuaGGGGGUUUCGCaa---AGG- -5'
27235 3' -51.8 NC_005832.1 + 832 0.72 0.742734
Target:  5'- gCCCGAGGCGcacgucugcUCCCCCAGG----UUCCa -3'
miRNA:   3'- -GGGCUUCGU---------AGGGGGUUUcgcaAAGG- -5'
27235 3' -51.8 NC_005832.1 + 35984 0.73 0.732549
Target:  5'- aCCUGAAGCGg--CCCGGGGCGUUguagugCCu -3'
miRNA:   3'- -GGGCUUCGUaggGGGUUUCGCAAa-----GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.