miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 5' -50.4 NC_005832.1 + 5833 0.66 0.987293
Target:  5'- gCUGGGcaugagggucaagAGGCUCcCCGGcAAGACaAUCa -3'
miRNA:   3'- -GACCU-------------UCUGAGaGGCC-UUCUGaUAGg -5'
27235 5' -50.4 NC_005832.1 + 12618 0.69 0.949605
Target:  5'- -aGGGAGAuaCUCUCUGGcgGGGACauggaGUCCa -3'
miRNA:   3'- gaCCUUCU--GAGAGGCC--UUCUGa----UAGG- -5'
27235 5' -50.4 NC_005832.1 + 18145 0.67 0.976407
Target:  5'- -cGcGAAGAUgucucugccacuguUCUCUGGAcuGCUGUCCu -3'
miRNA:   3'- gaC-CUUCUG--------------AGAGGCCUucUGAUAGG- -5'
27235 5' -50.4 NC_005832.1 + 20175 0.67 0.97168
Target:  5'- aUGGAcgaguuuaAGGCUUUUaugCGGAgaagggccccGGACUGUCCa -3'
miRNA:   3'- gACCU--------UCUGAGAG---GCCU----------UCUGAUAGG- -5'
27235 5' -50.4 NC_005832.1 + 29652 0.67 0.974536
Target:  5'- cCUGGu-GGC-CUCCgcucaGGGAGGCUAuaUCCa -3'
miRNA:   3'- -GACCuuCUGaGAGG-----CCUUCUGAU--AGG- -5'
27235 5' -50.4 NC_005832.1 + 32649 0.75 0.699162
Target:  5'- gCUGGAGGugUCUgCcGAAGGCcGUCCc -3'
miRNA:   3'- -GACCUUCugAGAgGcCUUCUGaUAGG- -5'
27235 5' -50.4 NC_005832.1 + 32742 0.78 0.527869
Target:  5'- gCUGGAGGugUCUgCGGGAGGCaggagaaacGUCCu -3'
miRNA:   3'- -GACCUUCugAGAgGCCUUCUGa--------UAGG- -5'
27235 5' -50.4 NC_005832.1 + 32835 0.68 0.968599
Target:  5'- gCUGGAGGugUCUgCCGaaggcaGGAGAaacGUCCu -3'
miRNA:   3'- -GACCUUCugAGA-GGC------CUUCUga-UAGG- -5'
27235 5' -50.4 NC_005832.1 + 36295 0.67 0.979611
Target:  5'- aUGGAcGccaGCUCUCCcucGGAAGGCcuuucgGUCCu -3'
miRNA:   3'- gACCUuC---UGAGAGG---CCUUCUGa-----UAGG- -5'
27235 5' -50.4 NC_005832.1 + 42000 0.73 0.80981
Target:  5'- gCUGGAccaGGACcgaggggucaccUCuUCCGGggGAgUGUCCc -3'
miRNA:   3'- -GACCU---UCUG------------AG-AGGCCuuCUgAUAGG- -5'
27235 5' -50.4 NC_005832.1 + 42328 0.71 0.892137
Target:  5'- gCUGGGGucCUUUUCGGGAGACgagGUCUc -3'
miRNA:   3'- -GACCUUcuGAGAGGCCUUCUGa--UAGG- -5'
27235 5' -50.4 NC_005832.1 + 42501 0.68 0.961739
Target:  5'- -aGGAGGGCcgccaugCUCUGGugguGGACcGUCCu -3'
miRNA:   3'- gaCCUUCUGa------GAGGCCu---UCUGaUAGG- -5'
27235 5' -50.4 NC_005832.1 + 43648 0.69 0.940231
Target:  5'- cCUGGGcgcacacauAGACUC-CUGGAGGGCgagggagaaaGUCCg -3'
miRNA:   3'- -GACCU---------UCUGAGaGGCCUUCUGa---------UAGG- -5'
27235 5' -50.4 NC_005832.1 + 56043 0.72 0.836794
Target:  5'- aCUGGGAGACUCUU-GGAAGAUg---- -3'
miRNA:   3'- -GACCUUCUGAGAGgCCUUCUGauagg -5'
27235 5' -50.4 NC_005832.1 + 59905 0.67 0.981846
Target:  5'- cCUGGAugaGGAggCUCUGGAgggcagAGACUuacGUCCc -3'
miRNA:   3'- -GACCU---UCUgaGAGGCCU------UCUGA---UAGG- -5'
27235 5' -50.4 NC_005832.1 + 66614 0.66 0.988991
Target:  5'- gCUGGAGGACUCgagggCCuGGAcgagGGGCaggaacguggcGUCCg -3'
miRNA:   3'- -GACCUUCUGAGa----GG-CCU----UCUGa----------UAGG- -5'
27235 5' -50.4 NC_005832.1 + 67242 0.66 0.985759
Target:  5'- cCUGGGAGAgggggcugccuCUCUacCCGGuGAGGCUGUg- -3'
miRNA:   3'- -GACCUUCU-----------GAGA--GGCC-UUCUGAUAgg -5'
27235 5' -50.4 NC_005832.1 + 67696 0.77 0.580764
Target:  5'- gCUGGGGaACUCUCCGGggGuCcugGUCCc -3'
miRNA:   3'- -GACCUUcUGAGAGGCCuuCuGa--UAGG- -5'
27235 5' -50.4 NC_005832.1 + 67903 0.67 0.97168
Target:  5'- -aGGAGGGCcggggUCUCUGGggGAaaaccUCCc -3'
miRNA:   3'- gaCCUUCUG-----AGAGGCCuuCUgau--AGG- -5'
27235 5' -50.4 NC_005832.1 + 69252 0.72 0.827995
Target:  5'- -aGGAAGGCcgagCUCgaGG-AGGCUAUCCg -3'
miRNA:   3'- gaCCUUCUGa---GAGg-CCuUCUGAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.