miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27235 5' -50.4 NC_005832.1 + 100452 0.7 0.912156
Target:  5'- uUGGAGGACgagCCGGu-GACcGUCCc -3'
miRNA:   3'- gACCUUCUGagaGGCCuuCUGaUAGG- -5'
27235 5' -50.4 NC_005832.1 + 98105 0.7 0.89907
Target:  5'- uUGGggGAUgCUUCGGggGAacGUCUg -3'
miRNA:   3'- gACCuuCUGaGAGGCCuuCUgaUAGG- -5'
27235 5' -50.4 NC_005832.1 + 42328 0.71 0.892137
Target:  5'- gCUGGGGucCUUUUCGGGAGACgagGUCUc -3'
miRNA:   3'- -GACCUUcuGAGAGGCCUUCUGa--UAGG- -5'
27235 5' -50.4 NC_005832.1 + 56043 0.72 0.836794
Target:  5'- aCUGGGAGACUCUU-GGAAGAUg---- -3'
miRNA:   3'- -GACCUUCUGAGAGgCCUUCUGauagg -5'
27235 5' -50.4 NC_005832.1 + 69252 0.72 0.827995
Target:  5'- -aGGAAGGCcgagCUCgaGG-AGGCUAUCCg -3'
miRNA:   3'- gaCCUUCUGa---GAGg-CCuUCUGAUAGG- -5'
27235 5' -50.4 NC_005832.1 + 42000 0.73 0.80981
Target:  5'- gCUGGAccaGGACcgaggggucaccUCuUCCGGggGAgUGUCCc -3'
miRNA:   3'- -GACCU---UCUG------------AG-AGGCCuuCUgAUAGG- -5'
27235 5' -50.4 NC_005832.1 + 69813 0.73 0.771362
Target:  5'- -cGGGAGACUUUCUaGGAGACUuUCUa -3'
miRNA:   3'- gaCCUUCUGAGAGGcCUUCUGAuAGG- -5'
27235 5' -50.4 NC_005832.1 + 69645 0.74 0.761377
Target:  5'- -cGGGAGACUUUCUaGGAGACUuucUCCc -3'
miRNA:   3'- gaCCUUCUGAGAGGcCUUCUGAu--AGG- -5'
27235 5' -50.4 NC_005832.1 + 69723 0.74 0.761377
Target:  5'- -cGGGAGACUUUCUaGGAGACUuucUCCc -3'
miRNA:   3'- gaCCUUCUGAGAGGcCUUCUGAu--AGG- -5'
27235 5' -50.4 NC_005832.1 + 70029 0.74 0.761377
Target:  5'- -cGGGAGACUUUCUaGGAGACUuucUCCc -3'
miRNA:   3'- gaCCUUCUGAGAGGcCUUCUGAu--AGG- -5'
27235 5' -50.4 NC_005832.1 + 32649 0.75 0.699162
Target:  5'- gCUGGAGGugUCUgCcGAAGGCcGUCCc -3'
miRNA:   3'- -GACCUUCugAGAgGcCUUCUGaUAGG- -5'
27235 5' -50.4 NC_005832.1 + 71156 0.75 0.667059
Target:  5'- gCUGGAgAGGCUCUCCGGcGGGCa---- -3'
miRNA:   3'- -GACCU-UCUGAGAGGCCuUCUGauagg -5'
27235 5' -50.4 NC_005832.1 + 67696 0.77 0.580764
Target:  5'- gCUGGGGaACUCUCCGGggGuCcugGUCCc -3'
miRNA:   3'- -GACCUUcUGAGAGGCCuuCuGa--UAGG- -5'
27235 5' -50.4 NC_005832.1 + 78234 0.77 0.570073
Target:  5'- cCUGGGAGAg-CUaCCGGGAGACaggGUCCu -3'
miRNA:   3'- -GACCUUCUgaGA-GGCCUUCUGa--UAGG- -5'
27235 5' -50.4 NC_005832.1 + 32742 0.78 0.527869
Target:  5'- gCUGGAGGugUCUgCGGGAGGCaggagaaacGUCCu -3'
miRNA:   3'- -GACCUUCugAGAgGCCUUCUGa--------UAGG- -5'
27235 5' -50.4 NC_005832.1 + 98018 1.12 0.004912
Target:  5'- uCUGGAAGACUCUCCGGAAGACUAUCCc -3'
miRNA:   3'- -GACCUUCUGAGAGGCCUUCUGAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.