miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27236 3' -56.2 NC_005832.1 + 1664 0.66 0.806521
Target:  5'- cCAGGCUCAGGC-CAUCGgcaguGAGg -3'
miRNA:   3'- uGUCCGAGUCCGgGUGGCaccuuUUC- -5'
27236 3' -56.2 NC_005832.1 + 1785 0.66 0.797316
Target:  5'- cCAuGGC-CAGGCCCcUCuUGGGAAAGa -3'
miRNA:   3'- uGU-CCGaGUCCGGGuGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 2041 0.67 0.768789
Target:  5'- -uGGGgUCu-GCCCuccucACCGUGGAGAGGg -3'
miRNA:   3'- ugUCCgAGucCGGG-----UGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 5563 0.66 0.797316
Target:  5'- gACGGuGCaCAGGCCCuCCGagUGGAGGc- -3'
miRNA:   3'- -UGUC-CGaGUCCGGGuGGC--ACCUUUuc -5'
27236 3' -56.2 NC_005832.1 + 6648 0.69 0.66681
Target:  5'- -gGGGCUCcuGGGCCagcaguaCGUGGGAGGGu -3'
miRNA:   3'- ugUCCGAG--UCCGGgug----GCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 9022 0.68 0.687758
Target:  5'- uGCAGGCcuccuugcuggUCAGGUCagaggACuCGUGGAGGGGa -3'
miRNA:   3'- -UGUCCG-----------AGUCCGGg----UG-GCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 10327 0.69 0.66681
Target:  5'- gACAGGCUCaAGGCCa---G-GGGAGAGg -3'
miRNA:   3'- -UGUCCGAG-UCCGGguggCaCCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 13251 0.69 0.624627
Target:  5'- uGCAGGaagCAGGCCCuga-UGGAAAAGg -3'
miRNA:   3'- -UGUCCga-GUCCGGGuggcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 17045 0.66 0.787953
Target:  5'- gGCAgGGC-CAGG-CCGCUGUcucuGGAGAAGa -3'
miRNA:   3'- -UGU-CCGaGUCCgGGUGGCA----CCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 22905 0.66 0.787953
Target:  5'- -aGGGCcauuuuaaacagUUGGGCCCAUC-UGGAAAAGu -3'
miRNA:   3'- ugUCCG------------AGUCCGGGUGGcACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 24795 0.67 0.728986
Target:  5'- --cGGC-CAGGUCCACCGUGa----- -3'
miRNA:   3'- uguCCGaGUCCGGGUGGCACcuuuuc -5'
27236 3' -56.2 NC_005832.1 + 27032 0.7 0.582536
Target:  5'- cACGucCUCAGGCCCGcgaaacguCCGUGGGAGAa -3'
miRNA:   3'- -UGUccGAGUCCGGGU--------GGCACCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 28052 0.71 0.510589
Target:  5'- --uGGCUCAGGCCCugUccagggugGUGGGGAc- -3'
miRNA:   3'- uguCCGAGUCCGGGugG--------CACCUUUuc -5'
27236 3' -56.2 NC_005832.1 + 29243 0.67 0.768789
Target:  5'- gACGGGUUCGGcGCCCGgCC-UGGGGu-- -3'
miRNA:   3'- -UGUCCGAGUC-CGGGU-GGcACCUUuuc -5'
27236 3' -56.2 NC_005832.1 + 32313 0.69 0.656286
Target:  5'- -uGGGCUCcGGaCCCcauGCCGUGGAc--- -3'
miRNA:   3'- ugUCCGAGuCC-GGG---UGGCACCUuuuc -5'
27236 3' -56.2 NC_005832.1 + 37946 0.69 0.624627
Target:  5'- cCAGGCgugccaGGGCcguaccccaucgCCACCGUGGGAGGa -3'
miRNA:   3'- uGUCCGag----UCCG------------GGUGGCACCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 40729 0.69 0.624627
Target:  5'- cGCGGGgUaCGGGUCCACCG-GGguGGGu -3'
miRNA:   3'- -UGUCCgA-GUCCGGGUGGCaCCuuUUC- -5'
27236 3' -56.2 NC_005832.1 + 41579 0.67 0.756049
Target:  5'- cCAGGCUgAGGCcgaggaggaggccgCCGCCGUcaGGGAGGc -3'
miRNA:   3'- uGUCCGAgUCCG--------------GGUGGCA--CCUUUUc -5'
27236 3' -56.2 NC_005832.1 + 42498 0.78 0.218914
Target:  5'- aGCAGGCcgaagacgccgaUCGGGCCU-CUGUGGAAGAGg -3'
miRNA:   3'- -UGUCCG------------AGUCCGGGuGGCACCUUUUC- -5'
27236 3' -56.2 NC_005832.1 + 44714 0.66 0.815557
Target:  5'- -gAGGCUCAGGCaCAUgGUgucuGGAAAAa -3'
miRNA:   3'- ugUCCGAGUCCGgGUGgCA----CCUUUUc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.