Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27236 | 3' | -56.2 | NC_005832.1 | + | 66682 | 0.68 | 0.718788 |
Target: 5'- gACAGGaUCAcGG-CCGCCGUGGAc--- -3' miRNA: 3'- -UGUCCgAGU-CCgGGUGGCACCUuuuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 90975 | 0.68 | 0.718788 |
Target: 5'- uACAGGUUCGacGGCCUGaCGUGGGuAGAGu -3' miRNA: 3'- -UGUCCGAGU--CCGGGUgGCACCU-UUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 80277 | 0.68 | 0.70851 |
Target: 5'- cCAGGaCUCuAGGCCCGuguaCGUGGAc--- -3' miRNA: 3'- uGUCC-GAG-UCCGGGUg---GCACCUuuuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 75734 | 0.68 | 0.698164 |
Target: 5'- gACAGGCagCAcacugcGGUCCugucugcgGCCGUGGGGAGGu -3' miRNA: 3'- -UGUCCGa-GU------CCGGG--------UGGCACCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 9022 | 0.68 | 0.687758 |
Target: 5'- uGCAGGCcuccuugcuggUCAGGUCagaggACuCGUGGAGGGGa -3' miRNA: 3'- -UGUCCG-----------AGUCCGGg----UG-GCACCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 6648 | 0.69 | 0.66681 |
Target: 5'- -gGGGCUCcuGGGCCagcaguaCGUGGGAGGGu -3' miRNA: 3'- ugUCCGAG--UCCGGgug----GCACCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 10327 | 0.69 | 0.66681 |
Target: 5'- gACAGGCUCaAGGCCa---G-GGGAGAGg -3' miRNA: 3'- -UGUCCGAG-UCCGGguggCaCCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 32313 | 0.69 | 0.656286 |
Target: 5'- -uGGGCUCcGGaCCCcauGCCGUGGAc--- -3' miRNA: 3'- ugUCCGAGuCC-GGG---UGGCACCUuuuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 50979 | 0.69 | 0.645741 |
Target: 5'- uCGGGCUaaCAGGUCCGCgCGgaaaaaaGGGAGAGa -3' miRNA: 3'- uGUCCGA--GUCCGGGUG-GCa------CCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 13251 | 0.69 | 0.624627 |
Target: 5'- uGCAGGaagCAGGCCCuga-UGGAAAAGg -3' miRNA: 3'- -UGUCCga-GUCCGGGuggcACCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 40729 | 0.69 | 0.624627 |
Target: 5'- cGCGGGgUaCGGGUCCACCG-GGguGGGu -3' miRNA: 3'- -UGUCCgA-GUCCGGGUGGCaCCuuUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 37946 | 0.69 | 0.624627 |
Target: 5'- cCAGGCgugccaGGGCcguaccccaucgCCACCGUGGGAGGa -3' miRNA: 3'- uGUCCGag----UCCG------------GGUGGCACCUUUUc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 104962 | 0.69 | 0.614075 |
Target: 5'- -aAGGCUCAGGCCU-CCGaggUGGAc--- -3' miRNA: 3'- ugUCCGAGUCCGGGuGGC---ACCUuuuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 72772 | 0.7 | 0.603537 |
Target: 5'- uCGGGCcccgCGGGCCCAUCG-GGAc--- -3' miRNA: 3'- uGUCCGa---GUCCGGGUGGCaCCUuuuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 27032 | 0.7 | 0.582536 |
Target: 5'- cACGucCUCAGGCCCGcgaaacguCCGUGGGAGAa -3' miRNA: 3'- -UGUccGAGUCCGGGU--------GGCACCUUUUc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 65581 | 0.7 | 0.582536 |
Target: 5'- gGCAGGaC-CcuGCCCGCCG-GGggGAGa -3' miRNA: 3'- -UGUCC-GaGucCGGGUGGCaCCuuUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 85344 | 0.71 | 0.520667 |
Target: 5'- uCA-GCUCAGaGUCCACCuUGGAAAAGa -3' miRNA: 3'- uGUcCGAGUC-CGGGUGGcACCUUUUC- -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 28052 | 0.71 | 0.510589 |
Target: 5'- --uGGCUCAGGCCCugUccagggugGUGGGGAc- -3' miRNA: 3'- uguCCGAGUCCGGGugG--------CACCUUUuc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 46198 | 0.75 | 0.339121 |
Target: 5'- --cGGCUCAGGCCCuCC-UGGAGGAc -3' miRNA: 3'- uguCCGAGUCCGGGuGGcACCUUUUc -5' |
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27236 | 3' | -56.2 | NC_005832.1 | + | 42498 | 0.78 | 0.218914 |
Target: 5'- aGCAGGCcgaagacgccgaUCGGGCCU-CUGUGGAAGAGg -3' miRNA: 3'- -UGUCCG------------AGUCCGGGuGGCACCUUUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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