miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27236 5' -55.3 NC_005832.1 + 15092 0.66 0.877143
Target:  5'- uUCuCUGUCC--GGUGGUCAUGGUc-- -3'
miRNA:   3'- gAG-GACAGGgaCCACUAGUACCGucg -5'
27236 5' -55.3 NC_005832.1 + 93672 0.66 0.861864
Target:  5'- aUCCgucGUCCCUGGggacGAUa--GGCAGg -3'
miRNA:   3'- gAGGa--CAGGGACCa---CUAguaCCGUCg -5'
27236 5' -55.3 NC_005832.1 + 16853 0.66 0.853889
Target:  5'- cCUCUcGUCCCcGGUGAUgAgGGCAa- -3'
miRNA:   3'- -GAGGaCAGGGaCCACUAgUaCCGUcg -5'
27236 5' -55.3 NC_005832.1 + 71537 0.66 0.853889
Target:  5'- cCUCgUGgCCCUGucUGcaGUCGUGGCAGUc -3'
miRNA:   3'- -GAGgACaGGGACc-AC--UAGUACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 9280 0.66 0.8457
Target:  5'- aUCagagGaCCCUGGUGcacAUCGUGGCcaGGCu -3'
miRNA:   3'- gAGga--CaGGGACCAC---UAGUACCG--UCG- -5'
27236 5' -55.3 NC_005832.1 + 11171 0.66 0.837303
Target:  5'- -aCCUGUCguaCCUGGccaUGAuggccuccgcgcUCAUGGUGGCc -3'
miRNA:   3'- gaGGACAG---GGACC---ACU------------AGUACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 29870 0.66 0.837303
Target:  5'- cCUCCUGUagcCCCUGGggacguUGAccaggCAUGGCuuaggGGCc -3'
miRNA:   3'- -GAGGACA---GGGACC------ACUa----GUACCG-----UCG- -5'
27236 5' -55.3 NC_005832.1 + 95729 0.67 0.798102
Target:  5'- gUCCUaggGUUCCUGGUGGgaucccuagcaaacUCugggcacggacuaGUGGCGGCu -3'
miRNA:   3'- gAGGA---CAGGGACCACU--------------AG-------------UACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 34949 0.67 0.783037
Target:  5'- gUCCggccaUCCCgGGgcacUCGUGGCAGCa -3'
miRNA:   3'- gAGGac---AGGGaCCacu-AGUACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 102901 0.69 0.682116
Target:  5'- --gCUGgcuaUgCUGGUGAUUGUGGCGGCc -3'
miRNA:   3'- gagGACa---GgGACCACUAGUACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 11977 0.7 0.618789
Target:  5'- gUCCUGUCCCUGua---CAUGGCgacGGCg -3'
miRNA:   3'- gAGGACAGGGACcacuaGUACCG---UCG- -5'
27236 5' -55.3 NC_005832.1 + 66267 0.73 0.47909
Target:  5'- uCUCC-GUCCCUGGUGucugacuauauguguGUCA-GGCAGa -3'
miRNA:   3'- -GAGGaCAGGGACCAC---------------UAGUaCCGUCg -5'
27236 5' -55.3 NC_005832.1 + 103462 0.74 0.409709
Target:  5'- -cCCUGUCCCcacggucuguUGGaUGAgauguacucugUCAUGGCAGCc -3'
miRNA:   3'- gaGGACAGGG----------ACC-ACU-----------AGUACCGUCG- -5'
27236 5' -55.3 NC_005832.1 + 65962 0.76 0.318978
Target:  5'- -aCCUGUCCCUGG-GAUCgGUGGUccuGCu -3'
miRNA:   3'- gaGGACAGGGACCaCUAG-UACCGu--CG- -5'
27236 5' -55.3 NC_005832.1 + 98216 1.11 0.001534
Target:  5'- cCUCCUGUCCCUGGUGAUCAUGGCAGCc -3'
miRNA:   3'- -GAGGACAGGGACCACUAGUACCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.