miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27237 3' -53.1 NC_005832.1 + 10809 0.66 0.950147
Target:  5'- -cUGGCGgUCAUGccGGACAGGAGguggggaucggcUGCGg -3'
miRNA:   3'- gcGCCGCgAGUAC--UCUGUUCUC------------AUGC- -5'
27237 3' -53.1 NC_005832.1 + 65638 0.66 0.950147
Target:  5'- uGuCGGCGUagGUGGGACcGGAGcACa -3'
miRNA:   3'- gC-GCCGCGagUACUCUGuUCUCaUGc -5'
27237 3' -53.1 NC_005832.1 + 52013 0.66 0.950147
Target:  5'- aCGCGGCcUUCAUaaGGGACGcggGGGGUAUu -3'
miRNA:   3'- -GCGCCGcGAGUA--CUCUGU---UCUCAUGc -5'
27237 3' -53.1 NC_005832.1 + 27583 0.66 0.936011
Target:  5'- aGCGGUGUgcacggcCGUG-GACGAuGAGUACu -3'
miRNA:   3'- gCGCCGCGa------GUACuCUGUU-CUCAUGc -5'
27237 3' -53.1 NC_005832.1 + 92589 0.66 0.930785
Target:  5'- aCGUGGCcaUCAUGAGAgAAaAGUACa -3'
miRNA:   3'- -GCGCCGcgAGUACUCUgUUcUCAUGc -5'
27237 3' -53.1 NC_005832.1 + 95195 0.67 0.919557
Target:  5'- gGCGGUGCUCAUGuccgucuccGAgAAGcgcaGGUACa -3'
miRNA:   3'- gCGCCGCGAGUACu--------CUgUUC----UCAUGc -5'
27237 3' -53.1 NC_005832.1 + 27930 0.67 0.90078
Target:  5'- aCGCGGUGgUCAaGGGGCaAAGGGUcccgccggagACGg -3'
miRNA:   3'- -GCGCCGCgAGUaCUCUG-UUCUCA----------UGC- -5'
27237 3' -53.1 NC_005832.1 + 80978 0.67 0.90078
Target:  5'- gGUGGCGUcggUCAacGGGACAugcccgguccaAGAGUACGc -3'
miRNA:   3'- gCGCCGCG---AGUa-CUCUGU-----------UCUCAUGC- -5'
27237 3' -53.1 NC_005832.1 + 16065 0.67 0.894013
Target:  5'- uGCGGCGCgCAaGAGAUGGuGAGUccguuGCGa -3'
miRNA:   3'- gCGCCGCGaGUaCUCUGUU-CUCA-----UGC- -5'
27237 3' -53.1 NC_005832.1 + 87721 0.67 0.894013
Target:  5'- uGgGGUGCUCAUGGGcucCAGGAGccuUugGu -3'
miRNA:   3'- gCgCCGCGAGUACUCu--GUUCUC---AugC- -5'
27237 3' -53.1 NC_005832.1 + 6107 0.68 0.886997
Target:  5'- uCGCGGCcugcCUCAUgGAGguucgcggcuGCGAGGGUugGg -3'
miRNA:   3'- -GCGCCGc---GAGUA-CUC----------UGUUCUCAugC- -5'
27237 3' -53.1 NC_005832.1 + 9259 0.68 0.856549
Target:  5'- uCGUGGCcagGCUCAUGAagauugacGGCAGGAGggACu -3'
miRNA:   3'- -GCGCCG---CGAGUACU--------CUGUUCUCa-UGc -5'
27237 3' -53.1 NC_005832.1 + 53980 0.69 0.831383
Target:  5'- gGCGGUGC-CGUGAG-CGGGAGg--- -3'
miRNA:   3'- gCGCCGCGaGUACUCuGUUCUCaugc -5'
27237 3' -53.1 NC_005832.1 + 6645 0.7 0.785633
Target:  5'- aGCGGgGCUCcUGGGcCAGcAGUACGu -3'
miRNA:   3'- gCGCCgCGAGuACUCuGUUcUCAUGC- -5'
27237 3' -53.1 NC_005832.1 + 6529 0.71 0.746286
Target:  5'- uGCGGgGC-CA-GGGACAGGGGgcagGCGg -3'
miRNA:   3'- gCGCCgCGaGUaCUCUGUUCUCa---UGC- -5'
27237 3' -53.1 NC_005832.1 + 23693 0.71 0.736152
Target:  5'- aCGCuGagGCUCAUGGGAgAcccAGAGUGCGg -3'
miRNA:   3'- -GCGcCg-CGAGUACUCUgU---UCUCAUGC- -5'
27237 3' -53.1 NC_005832.1 + 27213 0.78 0.36627
Target:  5'- aCGCGGCGCUCGUcGA----GGAGUACGg -3'
miRNA:   3'- -GCGCCGCGAGUA-CUcuguUCUCAUGC- -5'
27237 3' -53.1 NC_005832.1 + 98557 1.1 0.003032
Target:  5'- cCGCGGCGCUCAUGAGACAAGAGUACGg -3'
miRNA:   3'- -GCGCCGCGAGUACUCUGUUCUCAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.