miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27238 3' -57 NC_005832.1 + 21424 0.68 0.730858
Target:  5'- uUCUCGagGGCGUccaGGAgCUUUCCUCCCa -3'
miRNA:   3'- cGGGGCagUUGCG---UCU-GAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 70296 0.68 0.730857
Target:  5'- cCCCCGcCAaaucagaagACGCagggucAGACUUUgCUCCCa -3'
miRNA:   3'- cGGGGCaGU---------UGCG------UCUGAGAgGAGGG- -5'
27238 3' -57 NC_005832.1 + 79075 0.68 0.720924
Target:  5'- aUCCCGUCcagccuGACGCuGACaacCCUCCCc -3'
miRNA:   3'- cGGGGCAG------UUGCGuCUGagaGGAGGG- -5'
27238 3' -57 NC_005832.1 + 76413 0.68 0.720924
Target:  5'- gGCCCUGgcacaGguGcCUCUCCUCUCu -3'
miRNA:   3'- -CGGGGCaguugCguCuGAGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 8315 0.68 0.720924
Target:  5'- cGCUCCGgcucCGGCGCAGuGCUCagUUUCCg -3'
miRNA:   3'- -CGGGGCa---GUUGCGUC-UGAGagGAGGG- -5'
27238 3' -57 NC_005832.1 + 68330 0.68 0.710913
Target:  5'- aGCCCuCGUC-AC-CAGGC-CUCUUCCa -3'
miRNA:   3'- -CGGG-GCAGuUGcGUCUGaGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 5119 0.68 0.710913
Target:  5'- aCCCUGUCcACGuCAGAgUC-CCUCaCCc -3'
miRNA:   3'- cGGGGCAGuUGC-GUCUgAGaGGAG-GG- -5'
27238 3' -57 NC_005832.1 + 56223 0.68 0.710913
Target:  5'- uCCCgCGUCGugGgCcggugccggGGACUCUgcaCCUCCCu -3'
miRNA:   3'- cGGG-GCAGUugC-G---------UCUGAGA---GGAGGG- -5'
27238 3' -57 NC_005832.1 + 15634 0.68 0.710913
Target:  5'- uGCUCggUGUCGGaGCAGACgaugcgCUCCUCCg -3'
miRNA:   3'- -CGGG--GCAGUUgCGUCUGa-----GAGGAGGg -5'
27238 3' -57 NC_005832.1 + 52381 0.68 0.710913
Target:  5'- aCCUCGUa---GCAGAgcaucCUCUCCUCCa -3'
miRNA:   3'- cGGGGCAguugCGUCU-----GAGAGGAGGg -5'
27238 3' -57 NC_005832.1 + 12147 0.68 0.690698
Target:  5'- cCCCCGUCA----AGACUCcUCCggCCCa -3'
miRNA:   3'- cGGGGCAGUugcgUCUGAG-AGGa-GGG- -5'
27238 3' -57 NC_005832.1 + 31980 0.68 0.690697
Target:  5'- gGCCCCG-CAcAgGCAGucCUCUUCgCCCa -3'
miRNA:   3'- -CGGGGCaGU-UgCGUCu-GAGAGGaGGG- -5'
27238 3' -57 NC_005832.1 + 21176 0.69 0.670284
Target:  5'- uGUCCUGaUGACaGCAGACUCUCCaaaggCCUu -3'
miRNA:   3'- -CGGGGCaGUUG-CGUCUGAGAGGa----GGG- -5'
27238 3' -57 NC_005832.1 + 39284 0.69 0.670284
Target:  5'- gGCCCCGcgGGCGCAGACggagUCCacgUCCa -3'
miRNA:   3'- -CGGGGCagUUGCGUCUGag--AGGa--GGG- -5'
27238 3' -57 NC_005832.1 + 81590 0.69 0.660026
Target:  5'- gGCCCUGUauauuauuACGCccGACUCUCUcacaUCCCc -3'
miRNA:   3'- -CGGGGCAgu------UGCGu-CUGAGAGG----AGGG- -5'
27238 3' -57 NC_005832.1 + 97028 0.69 0.649745
Target:  5'- aGUCCuaCGUgGugGCGGAC-CUggCCUCCCa -3'
miRNA:   3'- -CGGG--GCAgUugCGUCUGaGA--GGAGGG- -5'
27238 3' -57 NC_005832.1 + 21209 0.69 0.63945
Target:  5'- gGCCCCGgCAAUcacCAG-C-CUCCUCCCc -3'
miRNA:   3'- -CGGGGCaGUUGc--GUCuGaGAGGAGGG- -5'
27238 3' -57 NC_005832.1 + 47608 0.69 0.629149
Target:  5'- -gCCCGUCAG-GCAGAgCUCcUCUUCCa -3'
miRNA:   3'- cgGGGCAGUUgCGUCU-GAG-AGGAGGg -5'
27238 3' -57 NC_005832.1 + 64216 0.7 0.618851
Target:  5'- gGCUCUGUCAAgGCcGAcCUCUgCUCCa -3'
miRNA:   3'- -CGGGGCAGUUgCGuCU-GAGAgGAGGg -5'
27238 3' -57 NC_005832.1 + 71920 0.7 0.61885
Target:  5'- uCCCCc-CAACGUGucUUCUCCUCCCa -3'
miRNA:   3'- cGGGGcaGUUGCGUcuGAGAGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.