Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27238 | 5' | -51 | NC_005832.1 | + | 41966 | 0.66 | 0.97546 |
Target: 5'- cGGGGuGAGcuucucccAGGGUUUGCCGUcUGGGc -3' miRNA: 3'- uCUCCuCUU--------UCUCAGACGGCA-ACUCu -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 71131 | 0.66 | 0.971769 |
Target: 5'- cAGaAGGAGAccgacgacuacuacAAGcAGUUUGCCGgaGAGGc -3' miRNA: 3'- -UC-UCCUCU--------------UUC-UCAGACGGCaaCUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 80348 | 0.67 | 0.966361 |
Target: 5'- uGGGGGAGAAGGucAGUaUGCCGUUc--- -3' miRNA: 3'- -UCUCCUCUUUC--UCAgACGGCAAcucu -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 18763 | 0.67 | 0.95911 |
Target: 5'- aAGAGGAGAaagaagAAGGGUCUGUCuaUGguAGAc -3' miRNA: 3'- -UCUCCUCU------UUCUCAGACGGcaAC--UCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 28073 | 0.67 | 0.966361 |
Target: 5'- uGGuGGGGAccAAGAGgcccUUUGCCGUgGAGGu -3' miRNA: 3'- -UCuCCUCU--UUCUC----AGACGGCAaCUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 32644 | 0.67 | 0.962859 |
Target: 5'- gAGAGGcuGGAGGuGUCUGCCGa----- -3' miRNA: 3'- -UCUCCu-CUUUCuCAGACGGCaacucu -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 43165 | 0.67 | 0.950411 |
Target: 5'- aGGcuGGGAAAGGGcCUGCCGggcuucuUUGAGGg -3' miRNA: 3'- -UCucCUCUUUCUCaGACGGC-------AACUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 32737 | 0.68 | 0.946332 |
Target: 5'- gAGAGGcuGGAGGuGUCUGCgGgaggcagGAGAa -3' miRNA: 3'- -UCUCCu-CUUUCuCAGACGgCaa-----CUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 103657 | 0.68 | 0.936494 |
Target: 5'- -cGGGAGccgucaaccacAGAGAGUUUGCUGgaGAGAu -3' miRNA: 3'- ucUCCUC-----------UUUCUCAGACGGCaaCUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 32031 | 0.68 | 0.931171 |
Target: 5'- --cGGAaaGGGAGGGUCaGCCGUccUGAGGg -3' miRNA: 3'- ucuCCU--CUUUCUCAGaCGGCA--ACUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 83353 | 0.68 | 0.931171 |
Target: 5'- cAGAGGuucuauaacgGGAuAGAGUCgGCCGg-GAGAa -3' miRNA: 3'- -UCUCC----------UCUuUCUCAGaCGGCaaCUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 28344 | 0.69 | 0.913575 |
Target: 5'- gAGGGGGGAAAGGGUUua-CGU-GAGAa -3' miRNA: 3'- -UCUCCUCUUUCUCAGacgGCAaCUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 66889 | 0.69 | 0.893563 |
Target: 5'- -cGGGAGGAAGGGgcacCUgGCCGUagUGGGAc -3' miRNA: 3'- ucUCCUCUUUCUCa---GA-CGGCA--ACUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 8999 | 0.69 | 0.913575 |
Target: 5'- aAGAGGAGAGGcaAGUUUGCC--UGAGGc -3' miRNA: 3'- -UCUCCUCUUUc-UCAGACGGcaACUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 35168 | 0.7 | 0.84669 |
Target: 5'- -uGGGAGAcagccucAGGGUCUGgaCCGUUGAGGc -3' miRNA: 3'- ucUCCUCUu------UCUCAGAC--GGCAACUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 90020 | 0.73 | 0.710178 |
Target: 5'- gGGAGGAGGAGuGAGguggGCCGUgaugGAGGa -3' miRNA: 3'- -UCUCCUCUUU-CUCaga-CGGCAa---CUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 32830 | 0.73 | 0.710178 |
Target: 5'- gAGAGGcuGGAGGuGUCUGCCGaaggcagGAGAa -3' miRNA: 3'- -UCUCCu-CUUUCuCAGACGGCaa-----CUCU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 101817 | 0.75 | 0.590973 |
Target: 5'- uGAGGGGAgGAGAGUCUG-CGUUGAcGGg -3' miRNA: 3'- uCUCCUCU-UUCUCAGACgGCAACU-CU- -5' |
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27238 | 5' | -51 | NC_005832.1 | + | 101716 | 1.1 | 0.004844 |
Target: 5'- cAGAGGAGAAAGAGUCUGCCGUUGAGAa -3' miRNA: 3'- -UCUCCUCUUUCUCAGACGGCAACUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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