Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27239 | 5' | -55.1 | NC_005832.1 | + | 102308 | 1.05 | 0.003098 |
Target: 5'- aACGCAAAGAAGGCCGCCGCUCAGAUUa -3' miRNA: 3'- -UGCGUUUCUUCCGGCGGCGAGUCUAA- -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 13648 | 0.66 | 0.855158 |
Target: 5'- gGCGUGcAGGGAGGCCGCCua-CAGGa- -3' miRNA: 3'- -UGCGU-UUCUUCCGGCGGcgaGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 10514 | 0.66 | 0.846864 |
Target: 5'- -aGCAGGGAcAGGCCGCUGC-CGu--- -3' miRNA: 3'- ugCGUUUCU-UCCGGCGGCGaGUcuaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 13039 | 0.66 | 0.838354 |
Target: 5'- --uCGGAGAcGGCUGCCaGCUCGGGg- -3' miRNA: 3'- ugcGUUUCUuCCGGCGG-CGAGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 102090 | 0.66 | 0.838354 |
Target: 5'- cCGCcauGGAGGCCGCCGaggCAGc-- -3' miRNA: 3'- uGCGuuuCUUCCGGCGGCga-GUCuaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 48655 | 0.66 | 0.838354 |
Target: 5'- uACGCGuaccucgucAAcAAGGUCGCCGgUCAGAc- -3' miRNA: 3'- -UGCGU---------UUcUUCCGGCGGCgAGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 52719 | 0.67 | 0.80233 |
Target: 5'- -aGCGgcGgcGGCCGCCGCaaAGGUc -3' miRNA: 3'- ugCGUuuCuuCCGGCGGCGagUCUAa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 97105 | 0.67 | 0.792875 |
Target: 5'- gACGCccuGGAGcAGGCCGCCGCgguGGc- -3' miRNA: 3'- -UGCG---UUUCuUCCGGCGGCGaguCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 42300 | 0.67 | 0.763589 |
Target: 5'- cUGCGAGGGAGGCCGUgGC-CAu--- -3' miRNA: 3'- uGCGUUUCUUCCGGCGgCGaGUcuaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 27856 | 0.74 | 0.404396 |
Target: 5'- -gGCAAAGGAGGCgGCCGggCAGGc- -3' miRNA: 3'- ugCGUUUCUUCCGgCGGCgaGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 38699 | 0.73 | 0.441491 |
Target: 5'- gACGCAGAGAGGGuuGCggaGCUCgAGGa- -3' miRNA: 3'- -UGCGUUUCUUCCggCGg--CGAG-UCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 98307 | 0.73 | 0.451063 |
Target: 5'- uGCGCAAGGGAGGCCGaaaggGcCUCGGGUc -3' miRNA: 3'- -UGCGUUUCUUCCGGCgg---C-GAGUCUAa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 42491 | 0.69 | 0.691244 |
Target: 5'- gGCGCGAAGcAGGCCGaagaCGCcgaUCGGGc- -3' miRNA: 3'- -UGCGUUUCuUCCGGCg---GCG---AGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 23631 | 0.68 | 0.722787 |
Target: 5'- gGCGUAAGGcAGGCCGgCGUaCAGGc- -3' miRNA: 3'- -UGCGUUUCuUCCGGCgGCGaGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 39274 | 0.68 | 0.753555 |
Target: 5'- gGCGUAAAG-GGGCC-CCGCgggcgCAGAc- -3' miRNA: 3'- -UGCGUUUCuUCCGGcGGCGa----GUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 18255 | 0.66 | 0.846864 |
Target: 5'- uCGCGAAGGugaGGGCCaGUgGaCUCAGAg- -3' miRNA: 3'- uGCGUUUCU---UCCGG-CGgC-GAGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 42519 | 0.74 | 0.404396 |
Target: 5'- gACGCGugcugcuccaugAGGAGGGCCGCCauGCUCuGGUg -3' miRNA: 3'- -UGCGU------------UUCUUCCGGCGG--CGAGuCUAa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 56966 | 0.7 | 0.626958 |
Target: 5'- -aGCGAGucucauGAAGGCCGUCGCcacUCAGAg- -3' miRNA: 3'- ugCGUUU------CUUCCGGCGGCG---AGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 8244 | 0.68 | 0.712345 |
Target: 5'- ------cGAAGGCCGCCcuGCUCAGGg- -3' miRNA: 3'- ugcguuuCUUCCGGCGG--CGAGUCUaa -5' |
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27239 | 5' | -55.1 | NC_005832.1 | + | 24750 | 0.68 | 0.716531 |
Target: 5'- aGCGuUAAGGAggaccuugagaccaaGGGCCGCCcgcuGCUCAGGa- -3' miRNA: 3'- -UGC-GUUUCU---------------UCCGGCGG----CGAGUCUaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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