Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2724 | 5' | -52.4 | NC_001491.2 | + | 2809 | 0.73 | 0.726345 |
Target: 5'- gGCGUGAAGACGcAGCuuuuuaGCCCC-GGGCa -3' miRNA: 3'- aCGUAUUUCUGC-UUG------CGGGGaCCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 3620 | 0.72 | 0.775636 |
Target: 5'- gGCGggcugGAGGGCGuccccccuUGCCCCUGGGCc -3' miRNA: 3'- aCGUa----UUUCUGCuu------GCGGGGACCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 8478 | 0.69 | 0.911682 |
Target: 5'- gGCAUcaAGAGGCGggUuCCgCUGGGCa -3' miRNA: 3'- aCGUA--UUUCUGCuuGcGGgGACCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 13928 | 0.69 | 0.928893 |
Target: 5'- cGCGccGGGGCuGGCGgCCUUGGGCGg -3' miRNA: 3'- aCGUauUUCUGcUUGCgGGGACCUGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 19731 | 0.75 | 0.643543 |
Target: 5'- aGCGUAcuuGGAUGGucucCGcCCCCUGGACGu -3' miRNA: 3'- aCGUAUu--UCUGCUu---GC-GGGGACCUGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 22943 | 0.66 | 0.978052 |
Target: 5'- cGCGUAucuaaucugugccGGGGCGAuauuaacuuAUGCCUCUGGAg- -3' miRNA: 3'- aCGUAU-------------UUCUGCU---------UGCGGGGACCUgc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 23261 | 0.69 | 0.905446 |
Target: 5'- cGCAac-GGGCGcGCGCCgCCUGG-CGg -3' miRNA: 3'- aCGUauuUCUGCuUGCGG-GGACCuGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 34412 | 0.69 | 0.905446 |
Target: 5'- cGCAUGGgcAGA-GAGCGCCCC-GGAg- -3' miRNA: 3'- aCGUAUU--UCUgCUUGCGGGGaCCUgc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 37685 | 0.69 | 0.911682 |
Target: 5'- gGCGUccacGGGGGCcGACGCCgCUUGGGCa -3' miRNA: 3'- aCGUA----UUUCUGcUUGCGG-GGACCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 39065 | 0.7 | 0.885272 |
Target: 5'- uUGCGcc--GGCGGAgGUCCCUGGAUa -3' miRNA: 3'- -ACGUauuuCUGCUUgCGGGGACCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 51281 | 0.68 | 0.948336 |
Target: 5'- cGCccucuGAGGCGGcaACGCcggccugguccCCCUGGGCGg -3' miRNA: 3'- aCGuau--UUCUGCU--UGCG-----------GGGACCUGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 69153 | 0.7 | 0.862983 |
Target: 5'- gUGCAauUAAAGACGAGUGCCCCUuuuuuugucGGcGCGc -3' miRNA: 3'- -ACGU--AUUUCUGCUUGCGGGGA---------CC-UGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 70776 | 0.67 | 0.963884 |
Target: 5'- aGCucaGGAGAUucGCGCUCCUGGAa- -3' miRNA: 3'- aCGua-UUUCUGcuUGCGGGGACCUgc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 71819 | 0.72 | 0.794478 |
Target: 5'- uUGUGUuagcuGACGGACuGCCCCUGGGUGg -3' miRNA: 3'- -ACGUAuuu--CUGCUUG-CGGGGACCUGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 72861 | 0.7 | 0.898963 |
Target: 5'- gGCGUcuuuguGGGCGGGCGCgCCUGGcuCGg -3' miRNA: 3'- aCGUAuu----UCUGCUUGCGgGGACCu-GC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 79778 | 0.66 | 0.973154 |
Target: 5'- aUGUAaaaguUGuuGACaAACGCCaCCUGGugGg -3' miRNA: 3'- -ACGU-----AUuuCUGcUUGCGG-GGACCugC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 82456 | 0.66 | 0.975821 |
Target: 5'- cUGUGUucuGuAUGAACGCCCCgGGAgGa -3' miRNA: 3'- -ACGUAuuuC-UGCUUGCGGGGaCCUgC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 85440 | 0.66 | 0.973154 |
Target: 5'- cGCAUGAgagucGGACGcgugUGCCCCgcGGGCa -3' miRNA: 3'- aCGUAUU-----UCUGCuu--GCGGGGa-CCUGc -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 94762 | 0.67 | 0.97028 |
Target: 5'- aGCucuuacGACGGuuacGCGCCUgCUGGACGg -3' miRNA: 3'- aCGuauuu-CUGCU----UGCGGG-GACCUGC- -5' |
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2724 | 5' | -52.4 | NC_001491.2 | + | 97231 | 0.77 | 0.549788 |
Target: 5'- aGCAUGuAGACGAGCGCcugaagaugCCCUGGGUGg -3' miRNA: 3'- aCGUAUuUCUGCUUGCG---------GGGACCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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