miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2724 5' -52.4 NC_001491.2 + 115411 0.7 0.878071
Target:  5'- cGCu--GAGACgGAGgGCCgCCUGGAUGc -3'
miRNA:   3'- aCGuauUUCUG-CUUgCGG-GGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 69153 0.7 0.862983
Target:  5'- gUGCAauUAAAGACGAGUGCCCCUuuuuuugucGGcGCGc -3'
miRNA:   3'- -ACGU--AUUUCUGCUUGCGGGGA---------CC-UGC- -5'
2724 5' -52.4 NC_001491.2 + 146544 0.71 0.855109
Target:  5'- aGUcUGAAGGCGGACGgCC-UGGGCGc -3'
miRNA:   3'- aCGuAUUUCUGCUUGCgGGgACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 71819 0.72 0.794478
Target:  5'- uUGUGUuagcuGACGGACuGCCCCUGGGUGg -3'
miRNA:   3'- -ACGUAuuu--CUGCUUG-CGGGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 101762 0.72 0.794478
Target:  5'- cUGCGU--GGACGAGCGUgaCCUGGcCGg -3'
miRNA:   3'- -ACGUAuuUCUGCUUGCGg-GGACCuGC- -5'
2724 5' -52.4 NC_001491.2 + 3620 0.72 0.775636
Target:  5'- gGCGggcugGAGGGCGuccccccuUGCCCCUGGGCc -3'
miRNA:   3'- aCGUa----UUUCUGCuu------GCGGGGACCUGc -5'
2724 5' -52.4 NC_001491.2 + 106468 0.72 0.775636
Target:  5'- uUGCGUA-GGAUGGACGUgUUUGGGCGa -3'
miRNA:   3'- -ACGUAUuUCUGCUUGCGgGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 2809 0.73 0.726345
Target:  5'- gGCGUGAAGACGcAGCuuuuuaGCCCC-GGGCa -3'
miRNA:   3'- aCGUAUUUCUGC-UUG------CGGGGaCCUGc -5'
2724 5' -52.4 NC_001491.2 + 19731 0.75 0.643543
Target:  5'- aGCGUAcuuGGAUGGucucCGcCCCCUGGACGu -3'
miRNA:   3'- aCGUAUu--UCUGCUu---GC-GGGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 97231 0.77 0.549788
Target:  5'- aGCAUGuAGACGAGCGCcugaagaugCCCUGGGUGg -3'
miRNA:   3'- aCGUAUuUCUGCUUGCG---------GGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 121525 0.78 0.460649
Target:  5'- aGCGUGGGGACGggUcCCCCgccggGGGCGa -3'
miRNA:   3'- aCGUAUUUCUGCuuGcGGGGa----CCUGC- -5'
2724 5' -52.4 NC_001491.2 + 143662 0.99 0.029597
Target:  5'- aUGCAUAAAGGUGAACGCCCCUGGACGc -3'
miRNA:   3'- -ACGUAUUUCUGCUUGCGGGGACCUGC- -5'
2724 5' -52.4 NC_001491.2 + 143546 1.09 0.006421
Target:  5'- aUGCAUAAAGACGAACGCCCCUGGACGc -3'
miRNA:   3'- -ACGUAUUUCUGCUUGCGGGGACCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.