miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27240 5' -54.5 NC_005832.1 + 43439 0.66 0.911172
Target:  5'- aUCCUccgcCCCCCGaGGAGaGGGAUAu -3'
miRNA:   3'- -AGGGuuuuGGGGGCaCCUCaCCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 2891 0.66 0.90486
Target:  5'- cCCCAcAGCCUuuGUGGAccggagGUGGcugGACGa -3'
miRNA:   3'- aGGGUuUUGGGggCACCU------CACC---UUGU- -5'
27240 5' -54.5 NC_005832.1 + 46446 0.66 0.90486
Target:  5'- ---aAAAACUCCCGcGGAgcuGUGGGACAa -3'
miRNA:   3'- agggUUUUGGGGGCaCCU---CACCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 75175 0.66 0.90486
Target:  5'- gUCgaCGAGACCCUCGaUGGuGUcgGGGACAu -3'
miRNA:   3'- -AGg-GUUUUGGGGGC-ACCuCA--CCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 12127 0.66 0.900952
Target:  5'- gCCCAGccuucgaaacgguccGACCCCaUGuUGGAG-GGGGCGg -3'
miRNA:   3'- aGGGUU---------------UUGGGG-GC-ACCUCaCCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 16026 0.66 0.898298
Target:  5'- -aCCAGAGCCCUgauUGUGGGGUGcaGGugAg -3'
miRNA:   3'- agGGUUUUGGGG---GCACCUCAC--CUugU- -5'
27240 5' -54.5 NC_005832.1 + 53715 0.66 0.891488
Target:  5'- cUCCUcGAACCCCgCGgGGuccaUGGAACAu -3'
miRNA:   3'- -AGGGuUUUGGGG-GCaCCuc--ACCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 53582 0.66 0.891488
Target:  5'- gUUCCAuggaCCCCGcGGGGUucgaGGAGCAg -3'
miRNA:   3'- -AGGGUuuugGGGGCaCCUCA----CCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 91933 0.66 0.890794
Target:  5'- cUCCCGAggacaggGACCUCUGcGGGGUGGucuuGACu -3'
miRNA:   3'- -AGGGUU-------UUGGGGGCaCCUCACC----UUGu -5'
27240 5' -54.5 NC_005832.1 + 80835 0.66 0.877143
Target:  5'- uUCCguGAACCCCUccagggcccUGGAG-GGGACGg -3'
miRNA:   3'- -AGGguUUUGGGGGc--------ACCUCaCCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 78909 0.66 0.877143
Target:  5'- aCCUAAgagguaGACCCCUgGUGGAGaUGGGGa- -3'
miRNA:   3'- aGGGUU------UUGGGGG-CACCUC-ACCUUgu -5'
27240 5' -54.5 NC_005832.1 + 79946 0.67 0.837303
Target:  5'- aCgUGGAGCCCgaCGUGGAcUGGGACAg -3'
miRNA:   3'- aGgGUUUUGGGg-GCACCUcACCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 55473 0.68 0.801806
Target:  5'- aUCCuuAACCCCUGUGGGccGGAAa- -3'
miRNA:   3'- aGGGuuUUGGGGGCACCUcaCCUUgu -5'
27240 5' -54.5 NC_005832.1 + 24854 0.68 0.783037
Target:  5'- aCCUAAAGCCCagagaguuugaCGUGGuGUGGGcCAg -3'
miRNA:   3'- aGGGUUUUGGGg----------GCACCuCACCUuGU- -5'
27240 5' -54.5 NC_005832.1 + 55837 0.69 0.753822
Target:  5'- -gUCAGGGCCgCCGUGGuGGUGGggUc -3'
miRNA:   3'- agGGUUUUGGgGGCACC-UCACCuuGu -5'
27240 5' -54.5 NC_005832.1 + 2037 0.7 0.713311
Target:  5'- gUCCUggGgucuGCCCuccucaCCGUGGAGaGGGACAu -3'
miRNA:   3'- -AGGGuuU----UGGG------GGCACCUCaCCUUGU- -5'
27240 5' -54.5 NC_005832.1 + 5170 0.7 0.713311
Target:  5'- -aCCA--GCCUCC-UGGGGUGGAACc -3'
miRNA:   3'- agGGUuuUGGGGGcACCUCACCUUGu -5'
27240 5' -54.5 NC_005832.1 + 37382 0.7 0.692572
Target:  5'- -aCCAcauGCCCUCG-GGAGUGGGagGCAg -3'
miRNA:   3'- agGGUuu-UGGGGGCaCCUCACCU--UGU- -5'
27240 5' -54.5 NC_005832.1 + 81385 0.7 0.682116
Target:  5'- gCCCAG-ACUCCCagGUGGGGUGGuuCAu -3'
miRNA:   3'- aGGGUUuUGGGGG--CACCUCACCuuGU- -5'
27240 5' -54.5 NC_005832.1 + 6721 0.71 0.671616
Target:  5'- cCCCAcuACCCCag-GGuGUGGGACu -3'
miRNA:   3'- aGGGUuuUGGGGgcaCCuCACCUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.