Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27240 | 5' | -54.5 | NC_005832.1 | + | 53715 | 0.66 | 0.891488 |
Target: 5'- cUCCUcGAACCCCgCGgGGuccaUGGAACAu -3' miRNA: 3'- -AGGGuUUUGGGG-GCaCCuc--ACCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 7628 | 0.73 | 0.555823 |
Target: 5'- gUCCCucaccucAUCCCCG-GGAGUGGAGgGg -3' miRNA: 3'- -AGGGuuu----UGGGGGCaCCUCACCUUgU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 20523 | 0.72 | 0.58715 |
Target: 5'- cUCUgAGGGCCCCCGUGGAcccucUGGGAgGa -3' miRNA: 3'- -AGGgUUUUGGGGGCACCUc----ACCUUgU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 78455 | 0.71 | 0.661082 |
Target: 5'- cCCCAucauGCCCCUGUGGcggugAGUGGccACAa -3' miRNA: 3'- aGGGUuu--UGGGGGCACC-----UCACCu-UGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 81385 | 0.7 | 0.682116 |
Target: 5'- gCCCAG-ACUCCCagGUGGGGUGGuuCAu -3' miRNA: 3'- aGGGUUuUGGGGG--CACCUCACCuuGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 37382 | 0.7 | 0.692572 |
Target: 5'- -aCCAcauGCCCUCG-GGAGUGGGagGCAg -3' miRNA: 3'- agGGUuu-UGGGGGCaCCUCACCU--UGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 5170 | 0.7 | 0.713311 |
Target: 5'- -aCCA--GCCUCC-UGGGGUGGAACc -3' miRNA: 3'- agGGUuuUGGGGGcACCUCACCUUGu -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 24854 | 0.68 | 0.783037 |
Target: 5'- aCCUAAAGCCCagagaguuugaCGUGGuGUGGGcCAg -3' miRNA: 3'- aGGGUUUUGGGg----------GCACCuCACCUuGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 80835 | 0.66 | 0.877143 |
Target: 5'- uUCCguGAACCCCUccagggcccUGGAG-GGGACGg -3' miRNA: 3'- -AGGguUUUGGGGGc--------ACCUCaCCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 91933 | 0.66 | 0.890794 |
Target: 5'- cUCCCGAggacaggGACCUCUGcGGGGUGGucuuGACu -3' miRNA: 3'- -AGGGUU-------UUGGGGGCaCCUCACC----UUGu -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 12127 | 0.66 | 0.900952 |
Target: 5'- gCCCAGccuucgaaacgguccGACCCCaUGuUGGAG-GGGGCGg -3' miRNA: 3'- aGGGUU---------------UUGGGG-GC-ACCUCaCCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 46446 | 0.66 | 0.90486 |
Target: 5'- ---aAAAACUCCCGcGGAgcuGUGGGACAa -3' miRNA: 3'- agggUUUUGGGGGCaCCU---CACCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 75175 | 0.66 | 0.90486 |
Target: 5'- gUCgaCGAGACCCUCGaUGGuGUcgGGGACAu -3' miRNA: 3'- -AGg-GUUUUGGGGGC-ACCuCA--CCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 16026 | 0.66 | 0.898298 |
Target: 5'- -aCCAGAGCCCUgauUGUGGGGUGcaGGugAg -3' miRNA: 3'- agGGUUUUGGGG---GCACCUCAC--CUugU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 6721 | 0.71 | 0.671616 |
Target: 5'- cCCCAcuACCCCag-GGuGUGGGACu -3' miRNA: 3'- aGGGUuuUGGGGgcaCCuCACCUUGu -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 55837 | 0.69 | 0.753822 |
Target: 5'- -gUCAGGGCCgCCGUGGuGGUGGggUc -3' miRNA: 3'- agGGUUUUGGgGGCACC-UCACCuuGu -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 55473 | 0.68 | 0.801806 |
Target: 5'- aUCCuuAACCCCUGUGGGccGGAAa- -3' miRNA: 3'- aGGGuuUUGGGGGCACCUcaCCUUgu -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 79946 | 0.67 | 0.837303 |
Target: 5'- aCgUGGAGCCCgaCGUGGAcUGGGACAg -3' miRNA: 3'- aGgGUUUUGGGg-GCACCUcACCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 53582 | 0.66 | 0.891488 |
Target: 5'- gUUCCAuggaCCCCGcGGGGUucgaGGAGCAg -3' miRNA: 3'- -AGGGUuuugGGGGCaCCUCA----CCUUGU- -5' |
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27240 | 5' | -54.5 | NC_005832.1 | + | 43439 | 0.66 | 0.911172 |
Target: 5'- aUCCUccgcCCCCCGaGGAGaGGGAUAu -3' miRNA: 3'- -AGGGuuuuGGGGGCaCCUCaCCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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