Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2725 | 5' | -59 | NC_001491.2 | + | 118402 | 0.66 | 0.80407 |
Target: 5'- cCGAgccCCGCggAGGgaaggCGAAGCGGucgcCCUCg -3' miRNA: 3'- aGCU---GGCGa-UCCa----GCUUCGCCc---GGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 146616 | 0.66 | 0.795288 |
Target: 5'- cCG-CCGCggAGG-CGcAGGaGGGCCUCg -3' miRNA: 3'- aGCuGGCGa-UCCaGC-UUCgCCCGGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 144491 | 0.66 | 0.786364 |
Target: 5'- gUGGCCGgUggcgGGGUucCGcGGCGGGCgCUCg -3' miRNA: 3'- aGCUGGCgA----UCCA--GCuUCGCCCG-GAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 144723 | 0.66 | 0.777306 |
Target: 5'- cUGGCUGCcguacagcAGGUCGGgcgcGGCGGGCUg- -3' miRNA: 3'- aGCUGGCGa-------UCCAGCU----UCGCCCGGag -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 118996 | 0.66 | 0.768124 |
Target: 5'- uUCGACCuaGC--GGUCGAAGCGcGGuggggauacuuaCCUCg -3' miRNA: 3'- -AGCUGG--CGauCCAGCUUCGC-CC------------GGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 145676 | 0.66 | 0.768124 |
Target: 5'- cUCGGCCGgugccuggguCUGGGUCuGggGUauGGGUCUg -3' miRNA: 3'- -AGCUGGC----------GAUCCAG-CuuCG--CCCGGAg -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 116459 | 0.67 | 0.74942 |
Target: 5'- -gGACCu---GGUCG-AGCGGGCCa- -3' miRNA: 3'- agCUGGcgauCCAGCuUCGCCCGGag -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 144675 | 0.67 | 0.74942 |
Target: 5'- uUCGGCCGCgcuGGcugcgCGGaugAGgGGGuCCUCg -3' miRNA: 3'- -AGCUGGCGau-CCa----GCU---UCgCCC-GGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 147745 | 0.67 | 0.720642 |
Target: 5'- -gGGCCGggGGGcCGcugcAGCGGGCCg- -3' miRNA: 3'- agCUGGCgaUCCaGCu---UCGCCCGGag -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 115817 | 0.67 | 0.720642 |
Target: 5'- cCGGCgGCccAGGcCGGAGCcucGGCCUCc -3' miRNA: 3'- aGCUGgCGa-UCCaGCUUCGc--CCGGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 146499 | 0.67 | 0.720642 |
Target: 5'- gCGGCCGCggcagccuuGcGUCGggGCccgaGGGCCg- -3' miRNA: 3'- aGCUGGCGau-------C-CAGCuuCG----CCCGGag -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 117601 | 0.68 | 0.681291 |
Target: 5'- aUCGGCUcugGCgggAGcGUCGAagcgcaAGCGGGCCa- -3' miRNA: 3'- -AGCUGG---CGa--UC-CAGCU------UCGCCCGGag -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 45712 | 0.7 | 0.561479 |
Target: 5'- aCGGCCGCUugagGGGUCGucGGUGGGagaaUCg -3' miRNA: 3'- aGCUGGCGA----UCCAGCu-UCGCCCgg--AG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 148793 | 0.7 | 0.561479 |
Target: 5'- gUCGAcCCGCgGGGcUCGGcGGCGGggaGCCUCg -3' miRNA: 3'- -AGCU-GGCGaUCC-AGCU-UCGCC---CGGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 123289 | 0.73 | 0.387993 |
Target: 5'- gCGGCCGCUGacUCGgcGUGGGUCUCc -3' miRNA: 3'- aGCUGGCGAUccAGCuuCGCCCGGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 147266 | 0.76 | 0.271958 |
Target: 5'- gCGGCCGCcugAGG--GGAGCGGGCCUUc -3' miRNA: 3'- aGCUGGCGa--UCCagCUUCGCCCGGAG- -5' |
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2725 | 5' | -59 | NC_001491.2 | + | 144218 | 1.1 | 0.001285 |
Target: 5'- uUCGACCGCUAGGUCGAAGCGGGCCUCg -3' miRNA: 3'- -AGCUGGCGAUCCAGCUUCGCCCGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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