Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 102950 | 0.66 | 0.999999 |
|
Target: 5'- uGAGUGG-UGUGCCGUGucaa-UAGCu -3' miRNA: 3'- cCUUAUCuACACGGCGUuucaaAUCG- -5' |
|||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 30209 | 0.67 | 0.999997 |
|
Target: 5'- aGAAcAGucggugGUGUCGCAAAGUUUuacgacGGCu -3' miRNA: 3'- cCUUaUCua----CACGGCGUUUCAAA------UCG- -5' |
|||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 125525 | 0.71 | 0.999303 |
|
Target: 5'- cGGGAUAGAUGUGCUGgAcauGgaUAGa -3' miRNA: 3'- -CCUUAUCUACACGGCgUuu-CaaAUCg -5' |
|||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 33969 | 0.72 | 0.998386 |
|
Target: 5'- -uGGUAGAUGUGUucUGCAGAGaUUGGUc -3' miRNA: 3'- ccUUAUCUACACG--GCGUUUCaAAUCG- -5' |
|||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 15286 | 0.72 | 0.998386 |
|
Target: 5'- ----cAGAcUGUGUCGUuuGGUUUGGCg -3' miRNA: 3'- ccuuaUCU-ACACGGCGuuUCAAAUCG- -5' |
|||||||
| 27252 | 5' | -43.8 | NC_005839.2 | + | 37973 | 1.18 | 0.012219 |
|
Target: 5'- uGGAAUAGAUGUGCCGCAAAGUUUAGCa -3' miRNA: 3'- -CCUUAUCUACACGGCGUUUCAAAUCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home