miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27253 5' -50.9 NC_005841.1 + 29774 0.66 0.868096
Target:  5'- -cGCAAACUGGcuaacaacGUugagcugaaagUCGCAaacauGGCCGCc -3'
miRNA:   3'- gaUGUUUGACC--------UA-----------AGCGUgu---CCGGCG- -5'
27253 5' -50.9 NC_005841.1 + 3346 0.66 0.859523
Target:  5'- -gGCAAGCUGGuua-GUuCAGGCUGg -3'
miRNA:   3'- gaUGUUUGACCuaagCGuGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 9876 0.67 0.792677
Target:  5'- -cACAggUcGGcaUCGCGCAGGUCGg -3'
miRNA:   3'- gaUGUuuGaCCuaAGCGUGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 10085 0.67 0.792677
Target:  5'- -cACAggUcGGcaUCGCGCAGGUCGg -3'
miRNA:   3'- gaUGUuuGaCCuaAGCGUGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 9906 0.67 0.782284
Target:  5'- -cGCAggUUGGcacCGUACAGGUCGg -3'
miRNA:   3'- gaUGUuuGACCuaaGCGUGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 10115 0.67 0.782284
Target:  5'- -cGCAggUUGGcacCGUACAGGUCGg -3'
miRNA:   3'- gaUGUuuGACCuaaGCGUGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 29812 0.67 0.782284
Target:  5'- gCUGCGGACUGGAUUCGgugACGauacGCUGUc -3'
miRNA:   3'- -GAUGUUUGACCUAAGCg--UGUc---CGGCG- -5'
27253 5' -50.9 NC_005841.1 + 9846 0.68 0.750119
Target:  5'- -gGCAggUcGGcaUCGCGCAGGUCGg -3'
miRNA:   3'- gaUGUuuGaCCuaAGCGUGUCCGGCg -5'
27253 5' -50.9 NC_005841.1 + 34773 0.68 0.750119
Target:  5'- gCUGCAAGCUGGuuacuggUCGCuguagaaccaAGGCCa- -3'
miRNA:   3'- -GAUGUUUGACCua-----AGCGug--------UCCGGcg -5'
27253 5' -50.9 NC_005841.1 + 9935 0.69 0.705425
Target:  5'- gUACAggUUGGcacCGCGCAGGuuGg -3'
miRNA:   3'- gAUGUuuGACCuaaGCGUGUCCggCg -5'
27253 5' -50.9 NC_005841.1 + 10039 0.69 0.705425
Target:  5'- gUACAggUUGGcacCGCGCAGGuuGg -3'
miRNA:   3'- gAUGUuuGACCuaaGCGUGUCCggCg -5'
27253 5' -50.9 NC_005841.1 + 9994 0.7 0.659451
Target:  5'- gUACAggUUGGcacCGCACAGGuuGg -3'
miRNA:   3'- gAUGUuuGACCuaaGCGUGUCCggCg -5'
27253 5' -50.9 NC_005841.1 + 7044 0.71 0.601429
Target:  5'- aCUugGAGCUaccGGAgcagUUGCGCGGGucauCCGCa -3'
miRNA:   3'- -GAugUUUGA---CCUa---AGCGUGUCC----GGCG- -5'
27253 5' -50.9 NC_005841.1 + 36502 0.72 0.510574
Target:  5'- aUGCAGGCUGuGAUUCcuGUACAGGuuGa -3'
miRNA:   3'- gAUGUUUGAC-CUAAG--CGUGUCCggCg -5'
27253 5' -50.9 NC_005841.1 + 4466 1.07 0.002841
Target:  5'- -cACAAACUGGAUUCGCACAGGCCGCc -3'
miRNA:   3'- gaUGUUUGACCUAAGCGUGUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.