miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27255 3' -53.5 NC_005841.1 + 38073 0.66 0.752826
Target:  5'- uGAGCGcguccCACCUgacCGACUGaCCGGuACa -3'
miRNA:   3'- gCUCGUa----GUGGAa--GUUGAC-GGCC-UGc -5'
27255 3' -53.5 NC_005841.1 + 37028 0.66 0.72032
Target:  5'- -aGGCAUCAUCU---AUUGCCGGuCGa -3'
miRNA:   3'- gcUCGUAGUGGAaguUGACGGCCuGC- -5'
27255 3' -53.5 NC_005841.1 + 36199 0.66 0.709283
Target:  5'- gCGAaCAUCugCacCAAUUGCCGGAUu -3'
miRNA:   3'- -GCUcGUAGugGaaGUUGACGGCCUGc -5'
27255 3' -53.5 NC_005841.1 + 19189 0.77 0.191736
Target:  5'- cCGGGCAUUACCggaCAACUGCUGcGGCa -3'
miRNA:   3'- -GCUCGUAGUGGaa-GUUGACGGC-CUGc -5'
27255 3' -53.5 NC_005841.1 + 15261 1.1 0.000905
Target:  5'- gCGAGCAUCACCUUCAACUGCCGGACGg -3'
miRNA:   3'- -GCUCGUAGUGGAAGUUGACGGCCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.