miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27262 5' -46.2 NC_005841.1 + 8959 0.66 0.982747
Target:  5'- aGGAac-UUGCgGGAU--AUGCCAGaCCg -3'
miRNA:   3'- -CCUauaAACGgUCUAauUGCGGUC-GG- -5'
27262 5' -46.2 NC_005841.1 + 22111 0.67 0.980347
Target:  5'- cGGUAaUUGUCGcGUUcgccAGCGCCAGCUu -3'
miRNA:   3'- cCUAUaAACGGUcUAA----UUGCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 2041 0.67 0.976581
Target:  5'- -------aGCCAGcaccauauccGCGCCAGCCu -3'
miRNA:   3'- ccuauaaaCGGUCuaau------UGCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 5460 0.67 0.974814
Target:  5'- cGGAg--UUGCCGGAU-AGCuGCCcgauAGCUc -3'
miRNA:   3'- -CCUauaAACGGUCUAaUUG-CGG----UCGG- -5'
27262 5' -46.2 NC_005841.1 + 27154 0.67 0.971656
Target:  5'- -------cGCCAGAUUAAgCGUC-GCCg -3'
miRNA:   3'- ccuauaaaCGGUCUAAUU-GCGGuCGG- -5'
27262 5' -46.2 NC_005841.1 + 37720 0.67 0.968223
Target:  5'- aGGAUGgaUGUCAGAggagaaagGAcacaaaugccacCGCCAGCUg -3'
miRNA:   3'- -CCUAUaaACGGUCUaa------UU------------GCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 2098 0.68 0.964505
Target:  5'- cGGAUAUggUGCUGGcuaAGCGCuCAGaCCg -3'
miRNA:   3'- -CCUAUAa-ACGGUCuaaUUGCG-GUC-GG- -5'
27262 5' -46.2 NC_005841.1 + 33725 0.7 0.917032
Target:  5'- aGGAcg-UUGUCAcguuGAgaggUGACGCCAGCg -3'
miRNA:   3'- -CCUauaAACGGU----CUa---AUUGCGGUCGg -5'
27262 5' -46.2 NC_005841.1 + 34202 0.7 0.917032
Target:  5'- -------cGCCAGA---ACGUCAGCCc -3'
miRNA:   3'- ccuauaaaCGGUCUaauUGCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 28844 0.72 0.834142
Target:  5'- cGGAUAUUaaugccuaucUGUCAGAagAAgGCCuGGCCa -3'
miRNA:   3'- -CCUAUAA----------ACGGUCUaaUUgCGG-UCGG- -5'
27262 5' -46.2 NC_005841.1 + 6556 0.72 0.834142
Target:  5'- cGGAg----GCCaAGAUUuccGCGCUGGCCg -3'
miRNA:   3'- -CCUauaaaCGG-UCUAAu--UGCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 36183 0.72 0.834142
Target:  5'- -----aUUGCCGGAUUuccugcucCGCCAGUCa -3'
miRNA:   3'- ccuauaAACGGUCUAAuu------GCGGUCGG- -5'
27262 5' -46.2 NC_005841.1 + 36844 1.16 0.002171
Target:  5'- gGGAUAUUUGCCAGAUUAACGCCAGCCu -3'
miRNA:   3'- -CCUAUAAACGGUCUAAUUGCGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.