miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27268 5' -51.5 NC_005841.1 + 27542 1.11 0.001069
Target:  5'- cGCAAGCCAACGCCUACAUGCUGGAAGc -3'
miRNA:   3'- -CGUUCGGUUGCGGAUGUACGACCUUC- -5'
27268 5' -51.5 NC_005841.1 + 36820 0.74 0.357842
Target:  5'- uGCAGucGCCAGCGCCgggGCAUggGCUGGucAGa -3'
miRNA:   3'- -CGUU--CGGUUGCGGa--UGUA--CGACCu-UC- -5'
27268 5' -51.5 NC_005841.1 + 26605 0.67 0.73923
Target:  5'- aGCAAGUCcuGACGCCgcugAUGUGCUGauGGg -3'
miRNA:   3'- -CGUUCGG--UUGCGGa---UGUACGACcuUC- -5'
27268 5' -51.5 NC_005841.1 + 18727 0.67 0.754668
Target:  5'- aGCGGGCUuuaacguGCGCuaaCUGCGgucagaagcugcaugUGCUGGAAGu -3'
miRNA:   3'- -CGUUCGGu------UGCG---GAUGU---------------ACGACCUUC- -5'
27268 5' -51.5 NC_005841.1 + 5747 0.66 0.813301
Target:  5'- aGCAGGCCAAUGCUgaauuCAUcGCUGc--- -3'
miRNA:   3'- -CGUUCGGUUGCGGau---GUA-CGACcuuc -5'
27268 5' -51.5 NC_005841.1 + 38401 0.66 0.803258
Target:  5'- gGCGAGCau-UGCaUUACGUGCUGGu-- -3'
miRNA:   3'- -CGUUCGguuGCG-GAUGUACGACCuuc -5'
27268 5' -51.5 NC_005841.1 + 33982 0.67 0.728054
Target:  5'- uCAGGUCGAUG-UUGCGUGUUGGAAu -3'
miRNA:   3'- cGUUCGGUUGCgGAUGUACGACCUUc -5'
27268 5' -51.5 NC_005841.1 + 2110 0.68 0.716771
Target:  5'- gGCAGGCUGGCGCggAUaugGUGCUGGcuAAGc -3'
miRNA:   3'- -CGUUCGGUUGCGgaUG---UACGACC--UUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.