Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2728 | 3' | -53.9 | NC_001491.2 | + | 4905 | 0.66 | 0.964558 |
Target: 5'- uGUGC--GACCACCAGCggcugUCUgACGUCGc -3' miRNA: 3'- cCACGagUUGGUGGUCG-----AGG-UGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 5262 | 0.66 | 0.953516 |
Target: 5'- cGGUGCUCGGCUucggaucggACCAGUuuaaUCCGgAggCGa -3' miRNA: 3'- -CCACGAGUUGG---------UGGUCG----AGGUgUa-GC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 34490 | 0.66 | 0.953112 |
Target: 5'- cGUGCUCGGCCACgCGcGC-CCuggcccgggacgaACGUCGu -3' miRNA: 3'- cCACGAGUUGGUG-GU-CGaGG-------------UGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 147786 | 0.66 | 0.944987 |
Target: 5'- cGGgccGCU-GGCCGCCAGCUCCcCGa-- -3' miRNA: 3'- -CCa--CGAgUUGGUGGUCGAGGuGUagc -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 117041 | 0.67 | 0.940362 |
Target: 5'- --gGC-CAACCcCCuGCcCCACAUCGg -3' miRNA: 3'- ccaCGaGUUGGuGGuCGaGGUGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 124879 | 0.67 | 0.919411 |
Target: 5'- aGGUGCUCAGCUACUccGCccugCCGCugcccaagAUCGa -3' miRNA: 3'- -CCACGAGUUGGUGGu-CGa---GGUG--------UAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 147644 | 0.68 | 0.913559 |
Target: 5'- --aGCUCcGCCACCAGCUCgGgGg-- -3' miRNA: 3'- ccaCGAGuUGGUGGUCGAGgUgUagc -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 58422 | 0.68 | 0.913559 |
Target: 5'- --cGCUgCAGCaccucugggcaGCCGGCUCUACAUCu -3' miRNA: 3'- ccaCGA-GUUGg----------UGGUCGAGGUGUAGc -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 19181 | 0.68 | 0.907463 |
Target: 5'- uGGUGgaUGAgCgugACCAGCUCCACggCGg -3' miRNA: 3'- -CCACgaGUUgG---UGGUCGAGGUGuaGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 53917 | 0.68 | 0.901124 |
Target: 5'- --aGUUC-GCCACCGGCUacaACAUCGu -3' miRNA: 3'- ccaCGAGuUGGUGGUCGAgg-UGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 127823 | 0.68 | 0.901124 |
Target: 5'- gGGUGUUUggugGGCUGCCAGUUCUGCGggguUCGg -3' miRNA: 3'- -CCACGAG----UUGGUGGUCGAGGUGU----AGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 101674 | 0.68 | 0.901124 |
Target: 5'- aGGUGC---ACCGCCAGCguggCCAuCAUgGa -3' miRNA: 3'- -CCACGaguUGGUGGUCGa---GGU-GUAgC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 50885 | 0.68 | 0.901124 |
Target: 5'- uGGUGCUUcgucucuuGGCgGCCGa-UCCACAUCGa -3' miRNA: 3'- -CCACGAG--------UUGgUGGUcgAGGUGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 66069 | 0.68 | 0.890486 |
Target: 5'- cGGUGCcuucUCAguauauACCGCCGGCUuacaauucccugaugCCAcCAUCGa -3' miRNA: 3'- -CCACG----AGU------UGGUGGUCGA---------------GGU-GUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 72635 | 0.69 | 0.861313 |
Target: 5'- cGGUGCUCGuaCAUCGGUuugcgcaauucggccUCCACGUUGa -3' miRNA: 3'- -CCACGAGUugGUGGUCG---------------AGGUGUAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 118240 | 0.69 | 0.850279 |
Target: 5'- cGGUcGCcgGGCCACgGGCUCCuCAUCa -3' miRNA: 3'- -CCA-CGagUUGGUGgUCGAGGuGUAGc -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 78522 | 0.7 | 0.833829 |
Target: 5'- --aGCUCAgccaggcgggcuACCACCAGCUCCuu-UCu -3' miRNA: 3'- ccaCGAGU------------UGGUGGUCGAGGuguAGc -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 65880 | 0.7 | 0.833829 |
Target: 5'- aGUGCUC-ACCGCCucuGuCUCCGCAgcaagagCGg -3' miRNA: 3'- cCACGAGuUGGUGGu--C-GAGGUGUa------GC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 45730 | 0.7 | 0.807757 |
Target: 5'- uGGUGCUCGugCAUCAGaacggCCGCuugaggggucGUCGg -3' miRNA: 3'- -CCACGAGUugGUGGUCga---GGUG----------UAGC- -5' |
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2728 | 3' | -53.9 | NC_001491.2 | + | 146250 | 0.7 | 0.807757 |
Target: 5'- cGGcgGCUCAugGCCACCAgGCggCCGCGUg- -3' miRNA: 3'- -CCa-CGAGU--UGGUGGU-CGa-GGUGUAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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