Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27287 | 3' | -56.5 | NC_005856.1 | + | 47196 | 0.66 | 0.825819 |
Target: 5'- gUGCuCCGGUGCUAAUuuuaGCUUAguGCCa -3' miRNA: 3'- gGCG-GGCCGCGAUUG----UGAGUauCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 68413 | 0.66 | 0.808148 |
Target: 5'- aCGCCUGGUGuCUcuguugacgGAUGCUCAUcGUCGa -3' miRNA: 3'- gGCGGGCCGC-GA---------UUGUGAGUAuCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 26297 | 0.66 | 0.807246 |
Target: 5'- -gGCCCuGGUGCUGuaACUCAUcauugauacguugAGCCa -3' miRNA: 3'- ggCGGG-CCGCGAUugUGAGUA-------------UCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 78250 | 0.66 | 0.78981 |
Target: 5'- aCGCUgGGUugUGACGCUCGccGCCGg -3' miRNA: 3'- gGCGGgCCGcgAUUGUGAGUauCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 57209 | 0.67 | 0.767993 |
Target: 5'- aCGCaaCGGCGCUGAuuacuuCACUCGUguaacgcugacaauGGCCa -3' miRNA: 3'- gGCGg-GCCGCGAUU------GUGAGUA--------------UCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 49643 | 0.67 | 0.760242 |
Target: 5'- aCCGugaaauaCCCGGCGUUGAUguACUguUGGCgCGg -3' miRNA: 3'- -GGC-------GGGCCGCGAUUG--UGAguAUCG-GC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 10380 | 0.67 | 0.751431 |
Target: 5'- cCCGCCUGuaccGCaGCUAugGCcCAUacuGGCCGg -3' miRNA: 3'- -GGCGGGC----CG-CGAUugUGaGUA---UCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 10434 | 0.67 | 0.751431 |
Target: 5'- aCGCCCGGCGaaccgGGCGCUCcu-GUUa -3' miRNA: 3'- gGCGGGCCGCga---UUGUGAGuauCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 69145 | 0.67 | 0.751431 |
Target: 5'- cCCGUCaugcugaaGGCGCUAaucACGCUgGaAGCCa -3' miRNA: 3'- -GGCGGg-------CCGCGAU---UGUGAgUaUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 50883 | 0.67 | 0.739547 |
Target: 5'- aUGCCCGGCGCUacgggauagaccggaGuguguuacaaagcagGCcaAUUCAUAGCCa -3' miRNA: 3'- gGCGGGCCGCGA---------------U---------------UG--UGAGUAUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 36366 | 0.68 | 0.711298 |
Target: 5'- -aGUCUGGCGU--GCACUCcauguguUAGCCGu -3' miRNA: 3'- ggCGGGCCGCGauUGUGAGu------AUCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 32365 | 0.68 | 0.711298 |
Target: 5'- -aGUCUGGCGU--GCACUCcauguguUAGCCGu -3' miRNA: 3'- ggCGGGCCGCGauUGUGAGu------AUCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 38400 | 0.68 | 0.701064 |
Target: 5'- gCCGCCCGGCGUU-GCAgugaUCGgAGCg- -3' miRNA: 3'- -GGCGGGCCGCGAuUGUg---AGUaUCGgc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 7953 | 0.68 | 0.677312 |
Target: 5'- -gGCCCGGaUGCUGGCuuUCAUguauucgaugugauGGCCGu -3' miRNA: 3'- ggCGGGCC-GCGAUUGugAGUA--------------UCGGC- -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 11893 | 0.69 | 0.628259 |
Target: 5'- aCGUCUGcGCGCUGGCugUCGaAGUCc -3' miRNA: 3'- gGCGGGC-CGCGAUUGugAGUaUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 23111 | 0.69 | 0.607353 |
Target: 5'- uUGCCCGGCauccAACGCcauUCAUGGCCa -3' miRNA: 3'- gGCGGGCCGcga-UUGUG---AGUAUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 17071 | 0.7 | 0.555557 |
Target: 5'- gCCuCCCGGCGCaguCGgUCAUAGCUu -3' miRNA: 3'- -GGcGGGCCGCGauuGUgAGUAUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 75499 | 0.74 | 0.376503 |
Target: 5'- cCUGCCCGaG-GCUGGCAUacauUCGUAGCCa -3' miRNA: 3'- -GGCGGGC-CgCGAUUGUG----AGUAUCGGc -5' |
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27287 | 3' | -56.5 | NC_005856.1 | + | 10260 | 1.1 | 0.001348 |
Target: 5'- aCCGCCCGGCGCUAACACUCAUAGCCGc -3' miRNA: 3'- -GGCGGGCCGCGAUUGUGAGUAUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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