miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27288 5' -51.2 NC_005856.1 + 88794 0.66 0.970283
Target:  5'- uGAcggCAUaaCACAGCaauaGCGGUccUGGCACCa -3'
miRNA:   3'- uCUa--GUG--GUGUCG----UGUCAa-ACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 18471 0.66 0.967042
Target:  5'- -cGUCGCCcauaauagGCAGCAgGGUaUUGGuUACCg -3'
miRNA:   3'- ucUAGUGG--------UGUCGUgUCA-AACC-GUGG- -5'
27288 5' -51.2 NC_005856.1 + 90494 0.67 0.942289
Target:  5'- ---aCACCAUcGCACAGUaUGcCGCCg -3'
miRNA:   3'- ucuaGUGGUGuCGUGUCAaACcGUGG- -5'
27288 5' -51.2 NC_005856.1 + 38516 0.67 0.942289
Target:  5'- cGAUCACUGCAacGC-CGGgc-GGCACUa -3'
miRNA:   3'- uCUAGUGGUGU--CGuGUCaaaCCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 36096 0.67 0.931902
Target:  5'- --cUCACCuucgcCAGCAgCGGU--GGCACCu -3'
miRNA:   3'- ucuAGUGGu----GUCGU-GUCAaaCCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 14780 0.67 0.931902
Target:  5'- aAGAUgGgCGCGGCAUccuGGgcuucGGCACCg -3'
miRNA:   3'- -UCUAgUgGUGUCGUG---UCaaa--CCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 32635 0.67 0.931902
Target:  5'- --cUCACCuucgcCAGCAgCGGU--GGCACCu -3'
miRNA:   3'- ucuAGUGGu----GUCGU-GUCAaaCCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 80859 0.68 0.901122
Target:  5'- cAGAUCACCAacaaccCAGaCAUuccuGUaUUGGUACCg -3'
miRNA:   3'- -UCUAGUGGU------GUC-GUGu---CA-AACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 8193 0.68 0.901122
Target:  5'- aGGggCGCCACAGCGCgAGgagcUGGC-Cg -3'
miRNA:   3'- -UCuaGUGGUGUCGUG-UCaa--ACCGuGg -5'
27288 5' -51.2 NC_005856.1 + 88515 0.68 0.893439
Target:  5'- cAGcgCACUguuUAGCGCGGUacgcuuaUUGGCAUCa -3'
miRNA:   3'- -UCuaGUGGu--GUCGUGUCA-------AACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 67820 0.69 0.886914
Target:  5'- cGAUCGCCAaucCAGCGCAuuacUGGUauuGCCa -3'
miRNA:   3'- uCUAGUGGU---GUCGUGUcaa-ACCG---UGG- -5'
27288 5' -51.2 NC_005856.1 + 32281 0.69 0.879419
Target:  5'- gGGAUCACCGgGGCGCugacagGGaaCGCCg -3'
miRNA:   3'- -UCUAGUGGUgUCGUGucaaa-CC--GUGG- -5'
27288 5' -51.2 NC_005856.1 + 36450 0.69 0.879419
Target:  5'- gGGAUCACCGgGGCGCugacagGGaaCGCCg -3'
miRNA:   3'- -UCUAGUGGUgUCGUGucaaa-CC--GUGG- -5'
27288 5' -51.2 NC_005856.1 + 42117 0.69 0.879419
Target:  5'- aAGAUCACCAaauggaaAGCuaAGUggUGGCGCUc -3'
miRNA:   3'- -UCUAGUGGUg------UCGugUCAa-ACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 83397 0.7 0.846962
Target:  5'- cGGAaaaUUGCCaACGGCuggaAGUUUGGCAUCa -3'
miRNA:   3'- -UCU---AGUGG-UGUCGug--UCAAACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 41937 0.73 0.687641
Target:  5'- -cAUCACUGCAuauaacGCAgGGUUUGGCACUu -3'
miRNA:   3'- ucUAGUGGUGU------CGUgUCAAACCGUGG- -5'
27288 5' -51.2 NC_005856.1 + 11391 1.14 0.002186
Target:  5'- gAGAUCACCACAGCACAGUUUGGCACCa -3'
miRNA:   3'- -UCUAGUGGUGUCGUGUCAAACCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.