miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27289 5' -54.1 NC_005856.1 + 69246 0.66 0.907781
Target:  5'- uGGAAgcCCUCGCCggaaACGUaC-CCGGCa -3'
miRNA:   3'- -CCUUaaGGAGCGG----UGCGaGuGGCUGc -5'
27289 5' -54.1 NC_005856.1 + 75442 0.66 0.905877
Target:  5'- cGGAGcUUCCUauCCugGCUuauaugcagcaaacCACCGGCa -3'
miRNA:   3'- -CCUU-AAGGAgcGGugCGA--------------GUGGCUGc -5'
27289 5' -54.1 NC_005856.1 + 90170 0.66 0.90069
Target:  5'- uGAAUUCUUUcgccguaGCCGCGCUCcgcGCCGGu- -3'
miRNA:   3'- cCUUAAGGAG-------CGGUGCGAG---UGGCUgc -5'
27289 5' -54.1 NC_005856.1 + 27713 0.67 0.88774
Target:  5'- ----cUCCUCGCCACuaccgUCGCCaGACGc -3'
miRNA:   3'- ccuuaAGGAGCGGUGcg---AGUGG-CUGC- -5'
27289 5' -54.1 NC_005856.1 + 69592 0.67 0.879846
Target:  5'- aGGGAUUcgaacCCUCuGCCAaGCUCGgcgaucuCCGACGu -3'
miRNA:   3'- -CCUUAA-----GGAG-CGGUgCGAGU-------GGCUGC- -5'
27289 5' -54.1 NC_005856.1 + 24762 0.69 0.778184
Target:  5'- --cAUUCaggCUUGCCACGCcCACCGAUa -3'
miRNA:   3'- ccuUAAG---GAGCGGUGCGaGUGGCUGc -5'
27289 5' -54.1 NC_005856.1 + 15473 0.69 0.768529
Target:  5'- gGGAuuGUUCCguUCGcCCGCGC-CACCaGCGg -3'
miRNA:   3'- -CCU--UAAGG--AGC-GGUGCGaGUGGcUGC- -5'
27289 5' -54.1 NC_005856.1 + 15573 0.7 0.748841
Target:  5'- -uGAUUUC-CGCCuuGCGUUUACCGGCGa -3'
miRNA:   3'- ccUUAAGGaGCGG--UGCGAGUGGCUGC- -5'
27289 5' -54.1 NC_005856.1 + 15412 1.12 0.001823
Target:  5'- aGGAAUUCCUCGCCACGCUCACCGACGg -3'
miRNA:   3'- -CCUUAAGGAGCGGUGCGAGUGGCUGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.