Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27290 | 5' | -57.3 | NC_005856.1 | + | 14357 | 0.66 | 0.774178 |
Target: 5'- uAGUGGCUUCa-UCUGCCAGCUuaagagCAUCGc -3' miRNA: 3'- -UCGCUGAAGgcAGGUGGUCGG------GUAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 81655 | 0.66 | 0.754841 |
Target: 5'- -uCGAUUUUCGcCCACCAGCCa--CGg -3' miRNA: 3'- ucGCUGAAGGCaGGUGGUCGGguaGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 67957 | 0.66 | 0.744999 |
Target: 5'- uAGCGAaagauuugUUCCaGaacaccaaauuuUCCACCAGCCCAUUu -3' miRNA: 3'- -UCGCUg-------AAGG-C------------AGGUGGUCGGGUAGc -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 43514 | 0.67 | 0.684123 |
Target: 5'- gGGCGGCUUgCUGUCCAaacuauUUAGCCUGUUa -3' miRNA: 3'- -UCGCUGAA-GGCAGGU------GGUCGGGUAGc -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 75024 | 0.68 | 0.663371 |
Target: 5'- uGCGguuauuaaaAgUUCCGUCCACCAGCgCAc-- -3' miRNA: 3'- uCGC---------UgAAGGCAGGUGGUCGgGUagc -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 15851 | 0.68 | 0.642514 |
Target: 5'- aGGCuGGCUguuaaUCCaGUCCACCAGCUgcaccauauCGUCGc -3' miRNA: 3'- -UCG-CUGA-----AGG-CAGGUGGUCGG---------GUAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 93978 | 0.68 | 0.642514 |
Target: 5'- cAGCGACggUCGUCCugUucGCCCgguuGUCGu -3' miRNA: 3'- -UCGCUGaaGGCAGGugGu-CGGG----UAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 17019 | 0.69 | 0.589327 |
Target: 5'- cAGUGuCgcgCCGUCCACCAGCgaauuaagcaaauCUAUCGc -3' miRNA: 3'- -UCGCuGaa-GGCAGGUGGUCG-------------GGUAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 9841 | 0.69 | 0.559393 |
Target: 5'- -uCGACgaCCGUCCGCCAuuuCCCGUCc -3' miRNA: 3'- ucGCUGaaGGCAGGUGGUc--GGGUAGc -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 13335 | 0.71 | 0.460427 |
Target: 5'- uGGUGGCUUguuuaggcaaaCUGUCCGCCAGCUgcugcaccgCAUCGg -3' miRNA: 3'- -UCGCUGAA-----------GGCAGGUGGUCGG---------GUAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 74417 | 0.72 | 0.388345 |
Target: 5'- cGCGGCauUUCCuUCCACCAGCaUAUCGa -3' miRNA: 3'- uCGCUG--AAGGcAGGUGGUCGgGUAGC- -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 22691 | 0.74 | 0.30211 |
Target: 5'- cAGCGACUUCCGUCCcaGCCGuGCCa---- -3' miRNA: 3'- -UCGCUGAAGGCAGG--UGGU-CGGguagc -5' |
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27290 | 5' | -57.3 | NC_005856.1 | + | 17615 | 1.08 | 0.001585 |
Target: 5'- aAGCGACUUCCGUCCACCAGCCCAUCGc -3' miRNA: 3'- -UCGCUGAAGGCAGGUGGUCGGGUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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