miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27290 5' -57.3 NC_005856.1 + 14357 0.66 0.774178
Target:  5'- uAGUGGCUUCa-UCUGCCAGCUuaagagCAUCGc -3'
miRNA:   3'- -UCGCUGAAGgcAGGUGGUCGG------GUAGC- -5'
27290 5' -57.3 NC_005856.1 + 81655 0.66 0.754841
Target:  5'- -uCGAUUUUCGcCCACCAGCCa--CGg -3'
miRNA:   3'- ucGCUGAAGGCaGGUGGUCGGguaGC- -5'
27290 5' -57.3 NC_005856.1 + 67957 0.66 0.744999
Target:  5'- uAGCGAaagauuugUUCCaGaacaccaaauuuUCCACCAGCCCAUUu -3'
miRNA:   3'- -UCGCUg-------AAGG-C------------AGGUGGUCGGGUAGc -5'
27290 5' -57.3 NC_005856.1 + 43514 0.67 0.684123
Target:  5'- gGGCGGCUUgCUGUCCAaacuauUUAGCCUGUUa -3'
miRNA:   3'- -UCGCUGAA-GGCAGGU------GGUCGGGUAGc -5'
27290 5' -57.3 NC_005856.1 + 75024 0.68 0.663371
Target:  5'- uGCGguuauuaaaAgUUCCGUCCACCAGCgCAc-- -3'
miRNA:   3'- uCGC---------UgAAGGCAGGUGGUCGgGUagc -5'
27290 5' -57.3 NC_005856.1 + 93978 0.68 0.642514
Target:  5'- cAGCGACggUCGUCCugUucGCCCgguuGUCGu -3'
miRNA:   3'- -UCGCUGaaGGCAGGugGu-CGGG----UAGC- -5'
27290 5' -57.3 NC_005856.1 + 15851 0.68 0.642514
Target:  5'- aGGCuGGCUguuaaUCCaGUCCACCAGCUgcaccauauCGUCGc -3'
miRNA:   3'- -UCG-CUGA-----AGG-CAGGUGGUCGG---------GUAGC- -5'
27290 5' -57.3 NC_005856.1 + 17019 0.69 0.589327
Target:  5'- cAGUGuCgcgCCGUCCACCAGCgaauuaagcaaauCUAUCGc -3'
miRNA:   3'- -UCGCuGaa-GGCAGGUGGUCG-------------GGUAGC- -5'
27290 5' -57.3 NC_005856.1 + 9841 0.69 0.559393
Target:  5'- -uCGACgaCCGUCCGCCAuuuCCCGUCc -3'
miRNA:   3'- ucGCUGaaGGCAGGUGGUc--GGGUAGc -5'
27290 5' -57.3 NC_005856.1 + 13335 0.71 0.460427
Target:  5'- uGGUGGCUUguuuaggcaaaCUGUCCGCCAGCUgcugcaccgCAUCGg -3'
miRNA:   3'- -UCGCUGAA-----------GGCAGGUGGUCGG---------GUAGC- -5'
27290 5' -57.3 NC_005856.1 + 74417 0.72 0.388345
Target:  5'- cGCGGCauUUCCuUCCACCAGCaUAUCGa -3'
miRNA:   3'- uCGCUG--AAGGcAGGUGGUCGgGUAGC- -5'
27290 5' -57.3 NC_005856.1 + 22691 0.74 0.30211
Target:  5'- cAGCGACUUCCGUCCcaGCCGuGCCa---- -3'
miRNA:   3'- -UCGCUGAAGGCAGG--UGGU-CGGguagc -5'
27290 5' -57.3 NC_005856.1 + 17615 1.08 0.001585
Target:  5'- aAGCGACUUCCGUCCACCAGCCCAUCGc -3'
miRNA:   3'- -UCGCUGAAGGCAGGUGGUCGGGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.