miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27291 3' -50.6 NC_005856.1 + 10903 0.67 0.949903
Target:  5'- cACAUGAUucuUGCgCAugcugagcaauUCCGGCGuaACCu -3'
miRNA:   3'- -UGUACUAuuuACGgGU-----------AGGCCGC--UGG- -5'
27291 3' -50.6 NC_005856.1 + 2725 0.68 0.9453
Target:  5'- uGCAUGAUGuuUGCCaucUCauaGGCGucaGCCa -3'
miRNA:   3'- -UGUACUAUuuACGGgu-AGg--CCGC---UGG- -5'
27291 3' -50.6 NC_005856.1 + 84974 0.68 0.935285
Target:  5'- uGCGUGA----UGCCCAUCgCGGCa--- -3'
miRNA:   3'- -UGUACUauuuACGGGUAG-GCCGcugg -5'
27291 3' -50.6 NC_005856.1 + 27850 0.7 0.876775
Target:  5'- aACA-GAUGGGguacgGCgCGUCUGGCGACg -3'
miRNA:   3'- -UGUaCUAUUUa----CGgGUAGGCCGCUGg -5'
27291 3' -50.6 NC_005856.1 + 19175 0.7 0.876775
Target:  5'- uACAUacUGuc-GCCCGuUCUGGCGACCu -3'
miRNA:   3'- -UGUAcuAUuuaCGGGU-AGGCCGCUGG- -5'
27291 3' -50.6 NC_005856.1 + 49582 0.74 0.684532
Target:  5'- cCAUGA-GAAUGCCguUCUGGCGcaACCa -3'
miRNA:   3'- uGUACUaUUUACGGguAGGCCGC--UGG- -5'
27291 3' -50.6 NC_005856.1 + 28657 0.76 0.564499
Target:  5'- uGCAUaucGAUA--UGCCCugcaaaugcGUCCGGCGGCCc -3'
miRNA:   3'- -UGUA---CUAUuuACGGG---------UAGGCCGCUGG- -5'
27291 3' -50.6 NC_005856.1 + 54056 0.79 0.431231
Target:  5'- gACAUcGGU-GAUGUUgAUCCGGCGACCa -3'
miRNA:   3'- -UGUA-CUAuUUACGGgUAGGCCGCUGG- -5'
27291 3' -50.6 NC_005856.1 + 17891 1.13 0.003348
Target:  5'- gACAUGAUAAAUGCCCAUCCGGCGACCu -3'
miRNA:   3'- -UGUACUAUUUACGGGUAGGCCGCUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.