miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27293 3' -54.9 NC_005856.1 + 29183 0.66 0.85521
Target:  5'- -aGCGaCCUcg-CGGAUCAGgUGGCAGc -3'
miRNA:   3'- gaCGC-GGGuaaGUCUGGUCaACCGUC- -5'
27293 3' -54.9 NC_005856.1 + 69355 0.66 0.846918
Target:  5'- --aUGCCgGUUUAGcUCAGUUGGUAGa -3'
miRNA:   3'- gacGCGGgUAAGUCuGGUCAACCGUC- -5'
27293 3' -54.9 NC_005856.1 + 70477 0.66 0.845234
Target:  5'- uCUGUGCCUAUgcauugauauugCuGACCAGgaUGGCAu -3'
miRNA:   3'- -GACGCGGGUAa-----------GuCUGGUCa-ACCGUc -5'
27293 3' -54.9 NC_005856.1 + 9978 0.66 0.838412
Target:  5'- uCUGCGCaguaCCGUcCGGACgGGaaaUGGCGGa -3'
miRNA:   3'- -GACGCG----GGUAaGUCUGgUCa--ACCGUC- -5'
27293 3' -54.9 NC_005856.1 + 83500 0.67 0.811683
Target:  5'- uUGCGCCCAcUCaacucgacGGACCAauuccgGGCGGc -3'
miRNA:   3'- gACGCGGGUaAG--------UCUGGUcaa---CCGUC- -5'
27293 3' -54.9 NC_005856.1 + 14675 0.7 0.594869
Target:  5'- -cGCGCCCAUcuUCGGA-CAGUcGGCGc -3'
miRNA:   3'- gaCGCGGGUA--AGUCUgGUCAaCCGUc -5'
27293 3' -54.9 NC_005856.1 + 35996 1.09 0.00173
Target:  5'- cCUGCGCCCAUUCAGACCAGUUGGCAGa -3'
miRNA:   3'- -GACGCGGGUAAGUCUGGUCAACCGUC- -5'
27293 3' -54.9 NC_005856.1 + 32735 1.09 0.00173
Target:  5'- cCUGCGCCCAUUCAGACCAGUUGGCAGa -3'
miRNA:   3'- -GACGCGGGUAAGUCUGGUCAACCGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.