miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27296 3' -46.7 NC_005856.1 + 26784 0.67 0.996263
Target:  5'- -aGGAUGGUUGCAGAAGaaCCUGAu--- -3'
miRNA:   3'- gaCUUACCGGUGUUUUC--GGACUuauu -5'
27296 3' -46.7 NC_005856.1 + 75369 0.67 0.996263
Target:  5'- aUGAgAUGGCCACAAAgaccaccacAGCCccgGAAa-- -3'
miRNA:   3'- gACU-UACCGGUGUUU---------UCGGa--CUUauu -5'
27296 3' -46.7 NC_005856.1 + 8308 0.69 0.983103
Target:  5'- -aGAGUGGCCugAcccacAGCCUGGu--- -3'
miRNA:   3'- gaCUUACCGGugUuu---UCGGACUuauu -5'
27296 3' -46.7 NC_005856.1 + 44152 0.69 0.980826
Target:  5'- aCUGAuggcgcauUGGCCACAAAgucuGGCCggGAAUu- -3'
miRNA:   3'- -GACUu-------ACCGGUGUUU----UCGGa-CUUAuu -5'
27296 3' -46.7 NC_005856.1 + 34433 1.08 0.013204
Target:  5'- cCUGAAUGGCCACAAAAGCCUGAAUAAa -3'
miRNA:   3'- -GACUUACCGGUGUUUUCGGACUUAUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.