Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27297 | 3' | -55.4 | NC_005856.1 | + | 36509 | 1.05 | 0.002741 |
Target: 5'- aAAAGAUCCCCCUGUUGAGCACGGCUAa -3' miRNA: 3'- -UUUCUAGGGGGACAACUCGUGCCGAU- -5' |
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27297 | 3' | -55.4 | NC_005856.1 | + | 32222 | 1.05 | 0.002741 |
Target: 5'- aAAAGAUCCCCCUGUUGAGCACGGCUAa -3' miRNA: 3'- -UUUCUAGGGGGACAACUCGUGCCGAU- -5' |
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27297 | 3' | -55.4 | NC_005856.1 | + | 37679 | 0.68 | 0.63885 |
Target: 5'- ---aAUCCCCCUgaauuuucgGUUuAGCGCGGCUGa -3' miRNA: 3'- uuucUAGGGGGA---------CAAcUCGUGCCGAU- -5' |
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27297 | 3' | -55.4 | NC_005856.1 | + | 17360 | 0.67 | 0.745647 |
Target: 5'- cGGAGAacgggacaacaUCCUCCUGUccgcgcuggcUGuGCACGGCg- -3' miRNA: 3'- -UUUCU-----------AGGGGGACA----------ACuCGUGCCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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