Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2730 | 3' | -60 | NC_001491.2 | + | 150061 | 1.06 | 0.001523 |
Target: 5'- gAGGAGCAGGAAGGGGAGGAGCAGGAAg -3' miRNA: 3'- -UCCUCGUCCUUCCCCUCCUCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 112426 | 0.72 | 0.367328 |
Target: 5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3' miRNA: 3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 112465 | 0.72 | 0.367328 |
Target: 5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3' miRNA: 3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 112504 | 0.72 | 0.367328 |
Target: 5'- aGGGGGCuAGGGcAGGGGGcuaGGGCAGGGGg -3' miRNA: 3'- -UCCUCG-UCCU-UCCCCUc--CUCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 150132 | 0.73 | 0.314173 |
Target: 5'- aAGGGGCGuggccggaagcGGAAGGGGAGGAGUccGGu -3' miRNA: 3'- -UCCUCGU-----------CCUUCCCCUCCUCGucCUu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 44426 | 0.73 | 0.314173 |
Target: 5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3' miRNA: 3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 44488 | 0.73 | 0.314173 |
Target: 5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3' miRNA: 3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 44551 | 0.73 | 0.314173 |
Target: 5'- uGGGGCA-GAGGGGGAGcGGguGGAAg -3' miRNA: 3'- uCCUCGUcCUUCCCCUCcUCguCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 140245 | 0.73 | 0.307072 |
Target: 5'- -cGAGCGGGGAcGGGGAcgGGGGCGGGc- -3' miRNA: 3'- ucCUCGUCCUU-CCCCU--CCUCGUCCuu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 143383 | 0.7 | 0.435231 |
Target: 5'- uGGGAGgGGGAGGGGGAa-AGguGGGc -3' miRNA: 3'- -UCCUCgUCCUUCCCCUccUCguCCUu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 139300 | 0.7 | 0.471792 |
Target: 5'- -aGAGCGGu-AGGGGAGGccgAGCGGGGGa -3' miRNA: 3'- ucCUCGUCcuUCCCCUCC---UCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 120283 | 0.69 | 0.490646 |
Target: 5'- cGGGGCAuGGggGGGGGuguGGAcgugGguGGAAg -3' miRNA: 3'- uCCUCGU-CCuuCCCCU---CCU----CguCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 150190 | 0.66 | 0.670622 |
Target: 5'- gGGGGGCGuGGucuAAGGGGGGGGGUcaaAGuGAc -3' miRNA: 3'- -UCCUCGU-CC---UUCCCCUCCUCG---UC-CUu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 121528 | 0.66 | 0.669609 |
Target: 5'- uGGAGCgugGGGAcgggucccccgccGGGGGcgaGGGGGuCAGGGAc -3' miRNA: 3'- uCCUCG---UCCU-------------UCCCC---UCCUC-GUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 89546 | 0.67 | 0.650312 |
Target: 5'- uGGGGCGGGAca-GGuuGAGCGGGGAg -3' miRNA: 3'- uCCUCGUCCUuccCCucCUCGUCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 147150 | 0.67 | 0.640131 |
Target: 5'- uGGGAGUGcuGGGGGGAcugGGAGUGGGAc -3' miRNA: 3'- -UCCUCGUccUUCCCCU---CCUCGUCCUu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 145400 | 0.68 | 0.589288 |
Target: 5'- cGGAGCGGGugcgccGGGGGAagcggcgccGGAGCGGc-- -3' miRNA: 3'- uCCUCGUCCu-----UCCCCU---------CCUCGUCcuu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 147907 | 0.68 | 0.579183 |
Target: 5'- cGGGGCGGGAGGccGGGAGuccgcccAGCAGGu- -3' miRNA: 3'- uCCUCGUCCUUC--CCCUCc------UCGUCCuu -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 58105 | 0.68 | 0.559093 |
Target: 5'- uGGAGCAGGGuccagaaccacuGGGGGuuuGGAGUgucgaugccGGGGGg -3' miRNA: 3'- uCCUCGUCCU------------UCCCCu--CCUCG---------UCCUU- -5' |
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2730 | 3' | -60 | NC_001491.2 | + | 59936 | 0.69 | 0.509843 |
Target: 5'- cGGAGCAGGGAuGGGuGGGGUcacacagcuccGGGGGu -3' miRNA: 3'- uCCUCGUCCUUcCCCuCCUCG-----------UCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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