miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2730 5' -57.8 NC_001491.2 + 80031 0.72 0.501656
Target:  5'- aGCCCu--GGCCCuGCCCAugUCGGCCCu -3'
miRNA:   3'- gCGGGuagUUGGG-CGGGU--AGUUGGGc -5'
2730 5' -57.8 NC_001491.2 + 118750 0.73 0.481878
Target:  5'- gCGCCCGUCGuccgagcGCCCGCCgCGg-AACCCc -3'
miRNA:   3'- -GCGGGUAGU-------UGGGCGG-GUagUUGGGc -5'
2730 5' -57.8 NC_001491.2 + 122989 0.75 0.377917
Target:  5'- aGCCCGUCcgcGCCCGCCCccGUC--CCCGu -3'
miRNA:   3'- gCGGGUAGu--UGGGCGGG--UAGuuGGGC- -5'
2730 5' -57.8 NC_001491.2 + 21188 0.78 0.240052
Target:  5'- gCGCCCccgcuGUCAACCC-CCCcUCAACCCa -3'
miRNA:   3'- -GCGGG-----UAGUUGGGcGGGuAGUUGGGc -5'
2730 5' -57.8 NC_001491.2 + 20711 0.81 0.150537
Target:  5'- uGCUaugCAGCCCGCCCAcUCAGCCCGc -3'
miRNA:   3'- gCGGguaGUUGGGCGGGU-AGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149380 0.84 0.102546
Target:  5'- nGCCCAUCAACCCGCCCAguaaacaaaGACCaCGc -3'
miRNA:   3'- gCGGGUAGUUGGGCGGGUag-------UUGG-GC- -5'
2730 5' -57.8 NC_001491.2 + 149765 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149729 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149693 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149657 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149621 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149585 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149549 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149513 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149477 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149441 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149405 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5'
2730 5' -57.8 NC_001491.2 + 149801 1.08 0.002402
Target:  5'- cCGCCCAUCAACCCGCCCAUCAACCCGc -3'
miRNA:   3'- -GCGGGUAGUUGGGCGGGUAGUUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.