miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27301 3' -50.6 NC_005856.1 + 39235 0.66 0.980649
Target:  5'- aCCGGCuuACAUCAGC--UAAGCAaaagucAUUGCu -3'
miRNA:   3'- -GGUCG--UGUGGUCGuaGUUCGU------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 76527 0.66 0.972853
Target:  5'- --cGCACACCAGaAUCAcuaAGCAGgcCGUg -3'
miRNA:   3'- gguCGUGUGGUCgUAGU---UCGUUa-GCG- -5'
27301 3' -50.6 NC_005856.1 + 2417 0.66 0.972853
Target:  5'- gCCGGUcguaccGCGCCGGguuGUCAuaaaaAGCAAUUGCc -3'
miRNA:   3'- -GGUCG------UGUGGUCg--UAGU-----UCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 25918 0.66 0.980649
Target:  5'- gCGGCGCAuUCGGCAUCAucauuGGCAGa--- -3'
miRNA:   3'- gGUCGUGU-GGUCGUAGU-----UCGUUagcg -5'
27301 3' -50.6 NC_005856.1 + 56861 0.66 0.972853
Target:  5'- aCCGGUagauaacgucGCAUCGGCAugaUCGGGCuaacCGCg -3'
miRNA:   3'- -GGUCG----------UGUGGUCGU---AGUUCGuua-GCG- -5'
27301 3' -50.6 NC_005856.1 + 28888 0.66 0.978014
Target:  5'- gUCAGCGCgcgagagugcccACCAGuCAUCcccgcagGGGCAaugguAUCGCg -3'
miRNA:   3'- -GGUCGUG------------UGGUC-GUAG-------UUCGU-----UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 73502 0.66 0.978264
Target:  5'- uCCAGUgucACACCuG-GUCG-GCAAUUGCg -3'
miRNA:   3'- -GGUCG---UGUGGuCgUAGUuCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 43909 0.66 0.978264
Target:  5'- aCCAGCGCAUC-GCGUUGguuuuGGCuuuuUUGCg -3'
miRNA:   3'- -GGUCGUGUGGuCGUAGU-----UCGuu--AGCG- -5'
27301 3' -50.6 NC_005856.1 + 91013 0.66 0.97647
Target:  5'- aUAGCGCGCgCGGCcuuccgcGcuucaacguuaucuaUCAGGUAAUCGCc -3'
miRNA:   3'- gGUCGUGUG-GUCG-------U---------------AGUUCGUUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 58357 0.66 0.972853
Target:  5'- uCCAGCAuCGCUuuauuaguGGCAUCcauGCuAUUGCg -3'
miRNA:   3'- -GGUCGU-GUGG--------UCGUAGuu-CGuUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 40426 0.66 0.972853
Target:  5'- gCCAGCgccGCAUCGGCAUacugaAAGCAccUGUa -3'
miRNA:   3'- -GGUCG---UGUGGUCGUAg----UUCGUuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 14693 0.66 0.972853
Target:  5'- gUCGGCGCACCucGCuauUCuGGUAAUCa- -3'
miRNA:   3'- -GGUCGUGUGGu-CGu--AGuUCGUUAGcg -5'
27301 3' -50.6 NC_005856.1 + 29604 0.66 0.969809
Target:  5'- gUAGCACACCAGUggAUC-GGCGuGUCa- -3'
miRNA:   3'- gGUCGUGUGGUCG--UAGuUCGU-UAGcg -5'
27301 3' -50.6 NC_005856.1 + 78177 0.66 0.969809
Target:  5'- aCGGUAaGCCAGCAaaucCGGGCGAuaUUGCu -3'
miRNA:   3'- gGUCGUgUGGUCGUa---GUUCGUU--AGCG- -5'
27301 3' -50.6 NC_005856.1 + 58582 0.66 0.966187
Target:  5'- gCGGCACGCgCGGCAUCAucuuuaaugaauuGGUuAUCa- -3'
miRNA:   3'- gGUCGUGUG-GUCGUAGU-------------UCGuUAGcg -5'
27301 3' -50.6 NC_005856.1 + 72443 0.66 0.980649
Target:  5'- uCC-GCACGCU-GU-UCAAGCGAUCGa -3'
miRNA:   3'- -GGuCGUGUGGuCGuAGUUCGUUAGCg -5'
27301 3' -50.6 NC_005856.1 + 12053 0.67 0.95923
Target:  5'- --uGCAuccucCACCAGCGggcgCAGGCGuuugauauccGUCGCg -3'
miRNA:   3'- gguCGU-----GUGGUCGUa---GUUCGU----------UAGCG- -5'
27301 3' -50.6 NC_005856.1 + 74475 0.67 0.963005
Target:  5'- gCCAGCGCGgUAGgAUCGGG--AUUGCu -3'
miRNA:   3'- -GGUCGUGUgGUCgUAGUUCguUAGCG- -5'
27301 3' -50.6 NC_005856.1 + 85643 0.67 0.963005
Target:  5'- gCGGCGCugCGGCuUCAgaaAGCA--CGUa -3'
miRNA:   3'- gGUCGUGugGUCGuAGU---UCGUuaGCG- -5'
27301 3' -50.6 NC_005856.1 + 50569 0.67 0.950906
Target:  5'- aCCGGCAaaggUCAGCAguggcugaUgAAGCGAUUGCu -3'
miRNA:   3'- -GGUCGUgu--GGUCGU--------AgUUCGUUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.