miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27303 3' -45.6 NC_005856.1 + 78397 0.66 0.999775
Target:  5'- cGAUCCAAUAcUCAGG-----GCAGAg -3'
miRNA:   3'- uCUAGGUUAUuAGUCCagguaUGUCU- -5'
27303 3' -45.6 NC_005856.1 + 32623 0.66 0.999627
Target:  5'- uGGUCUgAAUGGgcgCAGGUCUAUACGu- -3'
miRNA:   3'- uCUAGG-UUAUUa--GUCCAGGUAUGUcu -5'
27303 3' -45.6 NC_005856.1 + 36108 0.66 0.999627
Target:  5'- uGGUCUgAAUGGgcgCAGGUCUAUACGu- -3'
miRNA:   3'- uCUAGG-UUAUUa--GUCCAGGUAUGUcu -5'
27303 3' -45.6 NC_005856.1 + 73221 0.67 0.999399
Target:  5'- uGAUCCGGggaauauuUCGGuaauUCCAUACAGAc -3'
miRNA:   3'- uCUAGGUUauu-----AGUCc---AGGUAUGUCU- -5'
27303 3' -45.6 NC_005856.1 + 11599 0.67 0.999246
Target:  5'- cGAUCCgGGUAAaccgcaugcuUCaguGGGUCCGUAUAGGu -3'
miRNA:   3'- uCUAGG-UUAUU----------AG---UCCAGGUAUGUCU- -5'
27303 3' -45.6 NC_005856.1 + 28867 0.7 0.988034
Target:  5'- cGAUCCGgauggcagcguguacAUGAUCaAGGcuaaaUCCAUACAGGg -3'
miRNA:   3'- uCUAGGU---------------UAUUAG-UCC-----AGGUAUGUCU- -5'
27303 3' -45.6 NC_005856.1 + 13407 0.76 0.86581
Target:  5'- uGAUCCGgcgAUAGUaCAGGUCCAUGuCAGu -3'
miRNA:   3'- uCUAGGU---UAUUA-GUCCAGGUAU-GUCu -5'
27303 3' -45.6 NC_005856.1 + 62918 1.1 0.014635
Target:  5'- uAGAUCCAAUAAUCAGGUCCAUACAGAu -3'
miRNA:   3'- -UCUAGGUUAUUAGUCCAGGUAUGUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.