miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27305 5' -50.7 NC_005856.1 + 72676 0.66 0.968648
Target:  5'- gUGGUcuuaUAAcCugGCCuGCGCCUUUAg -3'
miRNA:   3'- gACCA----AUUaGugUGGuCGCGGGAAUg -5'
27305 5' -50.7 NC_005856.1 + 82824 0.66 0.965257
Target:  5'- gCUGGUUGgcaucaugcGUCGCAUCGucgaucGCGUCCUguUGCu -3'
miRNA:   3'- -GACCAAU---------UAGUGUGGU------CGCGGGA--AUG- -5'
27305 5' -50.7 NC_005856.1 + 43575 0.67 0.957719
Target:  5'- -aGGgcAAUgACAagauucUCAGCGCCCUUGa -3'
miRNA:   3'- gaCCaaUUAgUGU------GGUCGCGGGAAUg -5'
27305 5' -50.7 NC_005856.1 + 81147 0.67 0.944435
Target:  5'- -------cUC-CACCAGCGCCCUgGCu -3'
miRNA:   3'- gaccaauuAGuGUGGUCGCGGGAaUG- -5'
27305 5' -50.7 NC_005856.1 + 89178 0.69 0.896846
Target:  5'- aUGGUU-GUCACACCAacuacgaucuGCGgCCUgGCa -3'
miRNA:   3'- gACCAAuUAGUGUGGU----------CGCgGGAaUG- -5'
27305 5' -50.7 NC_005856.1 + 23065 0.71 0.813804
Target:  5'- -gGGgcuaAAUCGCGCCAGCGCUggcuguUUUACg -3'
miRNA:   3'- gaCCaa--UUAGUGUGGUCGCGG------GAAUG- -5'
27305 5' -50.7 NC_005856.1 + 46425 0.71 0.784711
Target:  5'- -cGGUUacaGAUCACACCGGCGaUCUUGu -3'
miRNA:   3'- gaCCAA---UUAGUGUGGUCGCgGGAAUg -5'
27305 5' -50.7 NC_005856.1 + 73370 0.72 0.754174
Target:  5'- -cGGUUGcUgGCACCGGCGUCCg--- -3'
miRNA:   3'- gaCCAAUuAgUGUGGUCGCGGGaaug -5'
27305 5' -50.7 NC_005856.1 + 15675 0.72 0.743728
Target:  5'- aCUGGUUAcgCAUgauuCCAGCGCCagUUAUg -3'
miRNA:   3'- -GACCAAUuaGUGu---GGUCGCGGg-AAUG- -5'
27305 5' -50.7 NC_005856.1 + 8152 0.75 0.557833
Target:  5'- aCUGGcUGAUCGC-CgAGCGCCCcgGCa -3'
miRNA:   3'- -GACCaAUUAGUGuGgUCGCGGGaaUG- -5'
27305 5' -50.7 NC_005856.1 + 69123 1.09 0.004728
Target:  5'- uCUGGUUAAUCACACCAGCGCCCUUACc -3'
miRNA:   3'- -GACCAAUUAGUGUGGUCGCGGGAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.