miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27306 5' -48.5 NC_005856.1 + 58290 0.65 0.997244
Target:  5'- gUGGCAGGuucaucuuUUGguucuuaugcUGCUGGUGAuguucuggacaugcAAUCCg -3'
miRNA:   3'- gGCUGUCCu-------AAC----------ACGACCACU--------------UUAGG- -5'
27306 5' -48.5 NC_005856.1 + 89261 0.66 0.994886
Target:  5'- ---uCAGGAgcUGUGCUGGUGGGcuUUCa -3'
miRNA:   3'- ggcuGUCCUa-ACACGACCACUUu-AGG- -5'
27306 5' -48.5 NC_005856.1 + 61414 0.67 0.991952
Target:  5'- cCCGGCAGcuucGAUgUGUGCUGGaggGAGAa-- -3'
miRNA:   3'- -GGCUGUC----CUA-ACACGACCa--CUUUagg -5'
27306 5' -48.5 NC_005856.1 + 57332 0.67 0.990721
Target:  5'- uCCGgguaaaGCAGGcUUcGUGaCUGGUGAugcuGUCCc -3'
miRNA:   3'- -GGC------UGUCCuAA-CAC-GACCACUu---UAGG- -5'
27306 5' -48.5 NC_005856.1 + 92487 0.67 0.988755
Target:  5'- -gGGCuGGGUUGcauguguugacguUGCUGGUGGcacaggacgagauaAGUCCg -3'
miRNA:   3'- ggCUGuCCUAAC-------------ACGACCACU--------------UUAGG- -5'
27306 5' -48.5 NC_005856.1 + 87609 0.69 0.97196
Target:  5'- aCCGugagggaauauuGCAGGGUgcuuUGCUGGUGGuugauUCCu -3'
miRNA:   3'- -GGC------------UGUCCUAac--ACGACCACUuu---AGG- -5'
27306 5' -48.5 NC_005856.1 + 62774 0.69 0.965483
Target:  5'- gCUGACGGGuugcuaaugUGUGCUGGcGGGAUa- -3'
miRNA:   3'- -GGCUGUCCua-------ACACGACCaCUUUAgg -5'
27306 5' -48.5 NC_005856.1 + 77524 0.7 0.95762
Target:  5'- uCUGACAcGGUgaUGCUGGUGGAccgacucAUCCg -3'
miRNA:   3'- -GGCUGUcCUAacACGACCACUU-------UAGG- -5'
27306 5' -48.5 NC_005856.1 + 15521 0.71 0.939949
Target:  5'- aCG-CAGGGUguccUGauaGCUGGUGGAGUCa -3'
miRNA:   3'- gGCuGUCCUA----ACa--CGACCACUUUAGg -5'
27306 5' -48.5 NC_005856.1 + 18515 0.73 0.85124
Target:  5'- uCCGGCGGGcuugGUGaaGGUGGAuUCCu -3'
miRNA:   3'- -GGCUGUCCuaa-CACgaCCACUUuAGG- -5'
27306 5' -48.5 NC_005856.1 + 70767 1.17 0.003322
Target:  5'- aCCGACAGGAUUGUGCUGGUGAAAUCCa -3'
miRNA:   3'- -GGCUGUCCUAACACGACCACUUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.