miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27307 5' -50 NC_005856.1 + 45657 0.7 0.888076
Target:  5'- -cCAUCAUUguuaUCUGCCCaGGCGAacgcuccguugguUGAAGg -3'
miRNA:   3'- aaGUGGUAA----AGACGGG-CCGCU-------------AUUUC- -5'
27307 5' -50 NC_005856.1 + 49797 0.69 0.916312
Target:  5'- aUCACCAUUUCgagCUGGUGAuUGAAGg -3'
miRNA:   3'- aAGUGGUAAAGacgGGCCGCU-AUUUC- -5'
27307 5' -50 NC_005856.1 + 9852 0.68 0.939278
Target:  5'- -cCGCCAUUUCccGUCCGGaCGGUAc-- -3'
miRNA:   3'- aaGUGGUAAAGa-CGGGCC-GCUAUuuc -5'
27307 5' -50 NC_005856.1 + 18203 0.66 0.977558
Target:  5'- aUUgACCGaaucaUCgGCCUGGCGAUGAAu -3'
miRNA:   3'- -AAgUGGUaa---AGaCGGGCCGCUAUUUc -5'
27307 5' -50 NC_005856.1 + 39428 0.66 0.98004
Target:  5'- cUUGCCGauaUCcGCCCGGUGAUGGu- -3'
miRNA:   3'- aAGUGGUaa-AGaCGGGCCGCUAUUuc -5'
27307 5' -50 NC_005856.1 + 1268 0.68 0.949059
Target:  5'- -aCACCAUuuuUUCUGaCCCGGCa------ -3'
miRNA:   3'- aaGUGGUA---AAGAC-GGGCCGcuauuuc -5'
27307 5' -50 NC_005856.1 + 34124 0.69 0.916312
Target:  5'- aUUUACCAgaaauaUCaGCCCGGCGAUu--- -3'
miRNA:   3'- -AAGUGGUaa----AGaCGGGCCGCUAuuuc -5'
27307 5' -50 NC_005856.1 + 50970 0.7 0.857024
Target:  5'- --aACCAgUUUCUGCCgcgaucaGGCGGUGAGGc -3'
miRNA:   3'- aagUGGU-AAAGACGGg------CCGCUAUUUC- -5'
27307 5' -50 NC_005856.1 + 74199 1.07 0.007894
Target:  5'- uUUCACCAUUUCUGCCCGGCGAUAAAGu -3'
miRNA:   3'- -AAGUGGUAAAGACGGGCCGCUAUUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.