miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27308 5' -50.1 NC_005856.1 + 29968 0.66 0.983616
Target:  5'- aGACGGGCCGaCUcaauaacgaAaaGGCACGGAAu- -3'
miRNA:   3'- aCUGCCUGGC-GA---------UggCUGUGUUUUuu -5'
27308 5' -50.1 NC_005856.1 + 18661 0.66 0.981488
Target:  5'- aUGGCGGcCUGaauUGCCGuGCGCAGGAAu -3'
miRNA:   3'- -ACUGCCuGGCg--AUGGC-UGUGUUUUUu -5'
27308 5' -50.1 NC_005856.1 + 15001 0.66 0.979159
Target:  5'- cGACGGcgaACgGCUACCGcgaGCAGAu-- -3'
miRNA:   3'- aCUGCC---UGgCGAUGGCug-UGUUUuuu -5'
27308 5' -50.1 NC_005856.1 + 13547 0.66 0.976619
Target:  5'- -uAUGGACCGCguaugUACUGACAUGGAc-- -3'
miRNA:   3'- acUGCCUGGCG-----AUGGCUGUGUUUuuu -5'
27308 5' -50.1 NC_005856.1 + 29788 0.66 0.976619
Target:  5'- gUGA-GGACCGCUAuCUGAUgACGGAAu- -3'
miRNA:   3'- -ACUgCCUGGCGAU-GGCUG-UGUUUUuu -5'
27308 5' -50.1 NC_005856.1 + 89427 0.66 0.97386
Target:  5'- aUGAUGGAagaaCGCUccgcGCCGAUgcguGCAAAAGu -3'
miRNA:   3'- -ACUGCCUg---GCGA----UGGCUG----UGUUUUUu -5'
27308 5' -50.1 NC_005856.1 + 24670 0.66 0.973572
Target:  5'- gUGACGGAUUGCUggaacuguuauuaGgUGugGCAAAGGAg -3'
miRNA:   3'- -ACUGCCUGGCGA-------------UgGCugUGUUUUUU- -5'
27308 5' -50.1 NC_005856.1 + 23746 0.67 0.964174
Target:  5'- cGAagaGGACCuuaCUACCGAUcaACGAAAAGa -3'
miRNA:   3'- aCUg--CCUGGc--GAUGGCUG--UGUUUUUU- -5'
27308 5' -50.1 NC_005856.1 + 73695 0.67 0.960064
Target:  5'- aUGACGGGuucaauuuuuuauCCGUUACCG-CGCGAc--- -3'
miRNA:   3'- -ACUGCCU-------------GGCGAUGGCuGUGUUuuuu -5'
27308 5' -50.1 NC_005856.1 + 70001 0.67 0.956468
Target:  5'- gUGAuCGGGCCGC-ACCaGACugGAc--- -3'
miRNA:   3'- -ACU-GCCUGGCGaUGG-CUGugUUuuuu -5'
27308 5' -50.1 NC_005856.1 + 76946 0.68 0.95222
Target:  5'- gGACaaGGCCGCUGCCacugcgcaGGCGCGAAGc- -3'
miRNA:   3'- aCUGc-CUGGCGAUGG--------CUGUGUUUUuu -5'
27308 5' -50.1 NC_005856.1 + 67657 0.68 0.937845
Target:  5'- cUGACGGACCGCguuacaaagcgAUCGGCAa------ -3'
miRNA:   3'- -ACUGCCUGGCGa----------UGGCUGUguuuuuu -5'
27308 5' -50.1 NC_005856.1 + 79364 0.68 0.932498
Target:  5'- aUGGCGGuaAUCGCUuguucugcACCGuACGCAAGAAc -3'
miRNA:   3'- -ACUGCC--UGGCGA--------UGGC-UGUGUUUUUu -5'
27308 5' -50.1 NC_005856.1 + 49310 0.69 0.901563
Target:  5'- cGGCGGACCGCUuuugACUcGCGCGc---- -3'
miRNA:   3'- aCUGCCUGGCGA----UGGcUGUGUuuuuu -5'
27308 5' -50.1 NC_005856.1 + 12948 0.73 0.750554
Target:  5'- gGGCGGGCUggaaaagauuGCUGCCGACuucCAGGAGGg -3'
miRNA:   3'- aCUGCCUGG----------CGAUGGCUGu--GUUUUUU- -5'
27308 5' -50.1 NC_005856.1 + 79697 1.06 0.008463
Target:  5'- gUGACGGACCGCUACCGACACAAAAAAc -3'
miRNA:   3'- -ACUGCCUGGCGAUGGCUGUGUUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.