miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27309 3' -57.8 NC_005856.1 + 26512 0.66 0.737281
Target:  5'- gGCCCCGGAagugaaagcacUCGcguuguucaucguCGCGAauaacCGUAGCGCGa -3'
miRNA:   3'- -CGGGGCCU-----------GGCu------------GCGUU-----GUAUCGCGC- -5'
27309 3' -57.8 NC_005856.1 + 69193 0.66 0.731343
Target:  5'- cCCCUGuuACCGAauUGCAGCcagGGCGCGg -3'
miRNA:   3'- cGGGGCc-UGGCU--GCGUUGua-UCGCGC- -5'
27309 3' -57.8 NC_005856.1 + 31997 0.68 0.608622
Target:  5'- cGCgCUGGACuUGAUGCAGCuc-GCGCa -3'
miRNA:   3'- -CGgGGCCUG-GCUGCGUUGuauCGCGc -5'
27309 3' -57.8 NC_005856.1 + 839 0.69 0.588032
Target:  5'- -gCCCGGACCGACGaugaAGCAuguuUAGCugGCc -3'
miRNA:   3'- cgGGGCCUGGCUGCg---UUGU----AUCG--CGc -5'
27309 3' -57.8 NC_005856.1 + 80664 0.69 0.577783
Target:  5'- uGCCgCCGGAgUGaACGCGuaguucuuGCGUAGCGUc -3'
miRNA:   3'- -CGG-GGCCUgGC-UGCGU--------UGUAUCGCGc -5'
27309 3' -57.8 NC_005856.1 + 82457 0.7 0.537245
Target:  5'- -aUCCGGGCCG-CGCAACGccGCGUu -3'
miRNA:   3'- cgGGGCCUGGCuGCGUUGUauCGCGc -5'
27309 3' -57.8 NC_005856.1 + 11702 0.71 0.43201
Target:  5'- -aCCCGGAUCGcCGUGACGgcGCGCu -3'
miRNA:   3'- cgGGGCCUGGCuGCGUUGUauCGCGc -5'
27309 3' -57.8 NC_005856.1 + 18300 0.72 0.414176
Target:  5'- aCCUgaUGGAaaGACGCGcACGUGGCGCGa -3'
miRNA:   3'- cGGG--GCCUggCUGCGU-UGUAUCGCGC- -5'
27309 3' -57.8 NC_005856.1 + 36210 0.72 0.40543
Target:  5'- cGCCuCCaGGGCCGuuACGCGACc--GCGCGa -3'
miRNA:   3'- -CGG-GG-CCUGGC--UGCGUUGuauCGCGC- -5'
27309 3' -57.8 NC_005856.1 + 32521 0.72 0.40543
Target:  5'- cGCCuCCaGGGCCGuuACGCGACc--GCGCGa -3'
miRNA:   3'- -CGG-GG-CCUGGC--UGCGUUGuauCGCGC- -5'
27309 3' -57.8 NC_005856.1 + 91032 1.09 0.001201
Target:  5'- gGCCCCGGACCGACGCAACAUAGCGCGc -3'
miRNA:   3'- -CGGGGCCUGGCUGCGUUGUAUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.