miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2731 5' -53.7 NC_001491.2 + 85163 0.66 0.973479
Target:  5'- cCGACUUuacaUCCuCGGCGAcCGCGgcuucuaugugcgauGCCGCa -3'
miRNA:   3'- cGUUGAG----AGG-GUCGCUuGUGC---------------UGGCG- -5'
2731 5' -53.7 NC_001491.2 + 106082 0.66 0.972383
Target:  5'- cGCAAUcC-CCgCGGCGAaggacagacccaGCGCGGCgGCa -3'
miRNA:   3'- -CGUUGaGaGG-GUCGCU------------UGUGCUGgCG- -5'
2731 5' -53.7 NC_001491.2 + 47597 0.66 0.972383
Target:  5'- -aAACgccgCCCuGUGAGgauCGCGGCCGCg -3'
miRNA:   3'- cgUUGaga-GGGuCGCUU---GUGCUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 70704 0.66 0.972383
Target:  5'- gGCAACUCccCCCAGCcguCGCG-CCa- -3'
miRNA:   3'- -CGUUGAGa-GGGUCGcuuGUGCuGGcg -5'
2731 5' -53.7 NC_001491.2 + 146037 0.66 0.969503
Target:  5'- cGCGGCUCUCgaacaCCAuGCGGACcagaGCGuuguACUGCu -3'
miRNA:   3'- -CGUUGAGAG-----GGU-CGCUUG----UGC----UGGCG- -5'
2731 5' -53.7 NC_001491.2 + 88832 0.66 0.969503
Target:  5'- uGCGAUUCcuacucCCCAGCGc-CACcaGACCGUc -3'
miRNA:   3'- -CGUUGAGa-----GGGUCGCuuGUG--CUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 1263 0.66 0.966415
Target:  5'- -aGGCUCUCUCu-CGGGCGCGGgcCCGUg -3'
miRNA:   3'- cgUUGAGAGGGucGCUUGUGCU--GGCG- -5'
2731 5' -53.7 NC_001491.2 + 66814 0.66 0.966415
Target:  5'- aGCGucGCUgucUUCCCGGCGccUugGGCCGg -3'
miRNA:   3'- -CGU--UGA---GAGGGUCGCuuGugCUGGCg -5'
2731 5' -53.7 NC_001491.2 + 112968 0.66 0.966415
Target:  5'- -aGGCUCUCUCu-CGGGCGCGGgcCCGUg -3'
miRNA:   3'- cgUUGAGAGGGucGCUUGUGCU--GGCG- -5'
2731 5' -53.7 NC_001491.2 + 103796 0.66 0.966415
Target:  5'- aGCcACUUaUCCAGCGAcaaAgAUGGCUGCu -3'
miRNA:   3'- -CGuUGAGaGGGUCGCU---UgUGCUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 125547 0.66 0.965771
Target:  5'- gGCGGCgcucgcgcgCUCCC-GCGcccgcucggucCACGGCCGCc -3'
miRNA:   3'- -CGUUGa--------GAGGGuCGCuu---------GUGCUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 105462 0.66 0.963112
Target:  5'- aGCAcCUgUCCCGGCcuACGCagacccaGCCGCa -3'
miRNA:   3'- -CGUuGAgAGGGUCGcuUGUGc------UGGCG- -5'
2731 5' -53.7 NC_001491.2 + 147772 0.66 0.961025
Target:  5'- cCAGCUC-CCCgaAGCGcGCGCcgucccgggccggggGGCCGCu -3'
miRNA:   3'- cGUUGAGaGGG--UCGCuUGUG---------------CUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 67462 0.66 0.959589
Target:  5'- cGUAGCcCUCCaguaCGAGCGCGGCCu- -3'
miRNA:   3'- -CGUUGaGAGGguc-GCUUGUGCUGGcg -5'
2731 5' -53.7 NC_001491.2 + 123473 0.67 0.957368
Target:  5'- aCAGCUCgggCUCGGCGcccgccauguugaguAGCGCGGCC-Ca -3'
miRNA:   3'- cGUUGAGa--GGGUCGC---------------UUGUGCUGGcG- -5'
2731 5' -53.7 NC_001491.2 + 101844 0.67 0.955842
Target:  5'- aGCGGCUCaagcgcgCCCc-CG-GCGCGACCGUc -3'
miRNA:   3'- -CGUUGAGa------GGGucGCuUGUGCUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 86805 0.67 0.955842
Target:  5'- gGCGACgUCUUCC-GUGAGCGCcuCCGUu -3'
miRNA:   3'- -CGUUG-AGAGGGuCGCUUGUGcuGGCG- -5'
2731 5' -53.7 NC_001491.2 + 74027 0.67 0.951865
Target:  5'- aGCAGCccucgCUCCCGccGCGc-CGCcGCCGCa -3'
miRNA:   3'- -CGUUGa----GAGGGU--CGCuuGUGcUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 74059 0.67 0.951865
Target:  5'- aGCAGCccucgCUCCCGccGCGc-CGCcGCCGCa -3'
miRNA:   3'- -CGUUGa----GAGGGU--CGCuuGUGcUGGCG- -5'
2731 5' -53.7 NC_001491.2 + 74091 0.67 0.951865
Target:  5'- aGCAGCccucgCUCCCGccGCGc-CGCcGCCGCa -3'
miRNA:   3'- -CGUUGa----GAGGGU--CGCuuGUGcUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.