miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27312 3' -52.5 NC_005856.1 + 33313 0.66 0.933016
Target:  5'- -gCCAGcCAGGAGcguaaGCAUCACCa -3'
miRNA:   3'- uaGGUUaGUCCUCaugg-CGUAGUGGg -5'
27312 3' -52.5 NC_005856.1 + 21162 0.67 0.902192
Target:  5'- -aCCAAUCAGGAugacuuuGUuuacACCGCGUUguGCCa -3'
miRNA:   3'- uaGGUUAGUCCU-------CA----UGGCGUAG--UGGg -5'
27312 3' -52.5 NC_005856.1 + 89409 0.67 0.896032
Target:  5'- uUCCGgcAUCAGGugcaucauGUugCGCAUgaaaGCCCa -3'
miRNA:   3'- uAGGU--UAGUCCu-------CAugGCGUAg---UGGG- -5'
27312 3' -52.5 NC_005856.1 + 56634 0.68 0.866153
Target:  5'- --aUAAUCGGGAacuUCGCAUCAUCCg -3'
miRNA:   3'- uagGUUAGUCCUcauGGCGUAGUGGG- -5'
27312 3' -52.5 NC_005856.1 + 69882 0.71 0.724836
Target:  5'- aGUCCAGUCu--GGUGCgGCccgAUCACCCg -3'
miRNA:   3'- -UAGGUUAGuccUCAUGgCG---UAGUGGG- -5'
27312 3' -52.5 NC_005856.1 + 13905 0.72 0.660586
Target:  5'- uUgCAGUCAGGAGaACCGguCcgCGCCCg -3'
miRNA:   3'- uAgGUUAGUCCUCaUGGC--GuaGUGGG- -5'
27312 3' -52.5 NC_005856.1 + 94290 1.11 0.002509
Target:  5'- uAUCCAAUCAGGAGUACCGCAUCACCCa -3'
miRNA:   3'- -UAGGUUAGUCCUCAUGGCGUAGUGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.