miRNA: 3'- gACCUACuAGa-GUGaCugUGUUAGCu -5'
miRNA: 3'- gaCCUACUAGag-UGACUGUGUU-AGCU- -5'
miRNA: 3'- -GAC-CUACUAGAGU----GACUGUGuuaGCU- -5'
miRNA: 3'- gaCCUacUAGAGUGACUGuGuUAGCU- -5'
miRNA: 3'- -GACCUACUAGAGUGACUGUGUUAGCU- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27312 | 5' | -47.9 | NC_005856.1 | + | 17718 | 0.66 | 0.99756 |
|
Target: 5'- aUGGAUGuUCagCGCgGugGCGAUCGu -3' miRNA: 3'- gACCUACuAGa-GUGaCugUGUUAGCu -5' |
|||||||
| 27312 | 5' | -47.9 | NC_005856.1 | + | 19577 | 0.67 | 0.991066 |
|
Target: 5'- -aGGAUGAUCcagACUGAUAUAGuUCGGc -3' miRNA: 3'- gaCCUACUAGag-UGACUGUGUU-AGCU- -5' |
|||||||
| 27312 | 5' | -47.9 | NC_005856.1 | + | 11284 | 0.68 | 0.984671 |
|
Target: 5'- gCUGuGGUGAUCUCAuaauCUGACGCc--CGGa -3' miRNA: 3'- -GAC-CUACUAGAGU----GACUGUGuuaGCU- -5' |
|||||||
| 27312 | 5' | -47.9 | NC_005856.1 | + | 31890 | 0.7 | 0.965872 |
|
Target: 5'- -cGGA--GUCUCACUGACuCcAUCGAc -3' miRNA: 3'- gaCCUacUAGAGUGACUGuGuUAGCU- -5' |
|||||||
| 27312 | 5' | -47.9 | NC_005856.1 | + | 94256 | 1.11 | 0.008464 |
|
Target: 5'- cCUGGAUGAUCUCACUGACACAAUCGAa -3' miRNA: 3'- -GACCUACUAGAGUGACUGUGUUAGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home